Hb_005333_190

Information

Type -
Description -
Location Contig5333: 188243-189982
Sequence    

Annotation

kegg
ID tcc:TCM_034244
description Clathrin adaptor complexes medium subunit family protein isoform 1
nr
ID XP_011016919.1
description PREDICTED: AP-4 complex subunit mu isoform X2 [Populus euphratica]
swissprot
ID Q9SB50
description AP-4 complex subunit mu OS=Arabidopsis thaliana GN=AP4M PE=2 SV=1
trembl
ID A0A059BLP5
description Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_F004171 PE=4 SV=1
Gene Ontology
ID GO:0005829
description ap-4 complex subunit mu

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47485: 174505-189867 , PASA_asmbl_47486: 190893-192829 , PASA_asmbl_47487: 190878-193566
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005333_190 0.0 - - PREDICTED: AP-4 complex subunit mu isoform X2 [Populus euphratica]
2 Hb_009119_040 0.1181898117 - - PREDICTED: tobamovirus multiplication protein 2A [Jatropha curcas]
3 Hb_181328_010 0.165883536 - - PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_004875_030 0.1791500555 - - PREDICTED: signal peptide peptidase-like 2 [Jatropha curcas]
5 Hb_002498_050 0.1800970002 - - PREDICTED: aspartic proteinase-like [Jatropha curcas]
6 Hb_013358_080 0.1834632509 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 25-like [Jatropha curcas]
7 Hb_000345_360 0.1850440845 - - PREDICTED: protein AUXIN RESPONSE 4 [Jatropha curcas]
8 Hb_002611_020 0.1864350144 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [Populus euphratica]
9 Hb_081517_010 0.1870588752 - - PREDICTED: putative potassium transporter 12 isoform X2 [Jatropha curcas]
10 Hb_117038_010 0.1873416803 - - cysteine protease [Hevea brasiliensis]
11 Hb_009529_040 0.1878663917 - - PREDICTED: transmembrane protein 120 homolog isoform X1 [Malus domestica]
12 Hb_004223_290 0.1899199983 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
13 Hb_013358_090 0.1907493302 - - hypothetical protein Csa_4G652025 [Cucumis sativus]
14 Hb_009851_050 0.1927760456 - - PREDICTED: nephrocystin-3 [Jatropha curcas]
15 Hb_028707_080 0.1961908039 - - plasma membrane aquaporin 1 [Hevea brasiliensis]
16 Hb_141132_010 0.1968049035 - - Hsc70-interacting protein, putative [Ricinus communis]
17 Hb_111973_010 0.197779502 - - Disease resistance protein RPS5, putative [Ricinus communis]
18 Hb_086765_010 0.1981096843 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]
19 Hb_000091_060 0.2000669136 - - PREDICTED: galactose oxidase [Jatropha curcas]
20 Hb_002400_330 0.2006892508 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005333_190 Hb_005333_190 Hb_009119_040 Hb_009119_040 Hb_005333_190--Hb_009119_040 Hb_181328_010 Hb_181328_010 Hb_005333_190--Hb_181328_010 Hb_004875_030 Hb_004875_030 Hb_005333_190--Hb_004875_030 Hb_002498_050 Hb_002498_050 Hb_005333_190--Hb_002498_050 Hb_013358_080 Hb_013358_080 Hb_005333_190--Hb_013358_080 Hb_000345_360 Hb_000345_360 Hb_005333_190--Hb_000345_360 Hb_002400_330 Hb_002400_330 Hb_009119_040--Hb_002400_330 Hb_028912_040 Hb_028912_040 Hb_009119_040--Hb_028912_040 Hb_051437_010 Hb_051437_010 Hb_009119_040--Hb_051437_010 Hb_009119_040--Hb_181328_010 Hb_009529_040 Hb_009529_040 Hb_009119_040--Hb_009529_040 Hb_002611_020 Hb_002611_020 Hb_181328_010--Hb_002611_020 Hb_013358_090 Hb_013358_090 Hb_181328_010--Hb_013358_090 Hb_181328_010--Hb_002400_330 Hb_106415_010 Hb_106415_010 Hb_181328_010--Hb_106415_010 Hb_086765_010 Hb_086765_010 Hb_181328_010--Hb_086765_010 Hb_050912_010 Hb_050912_010 Hb_181328_010--Hb_050912_010 Hb_004875_030--Hb_000345_360 Hb_004223_290 Hb_004223_290 Hb_004875_030--Hb_004223_290 Hb_000990_090 Hb_000990_090 Hb_004875_030--Hb_000990_090 Hb_002044_050 Hb_002044_050 Hb_004875_030--Hb_002044_050 Hb_001486_070 Hb_001486_070 Hb_004875_030--Hb_001486_070 Hb_009529_030 Hb_009529_030 Hb_004875_030--Hb_009529_030 Hb_000230_180 Hb_000230_180 Hb_002498_050--Hb_000230_180 Hb_028707_080 Hb_028707_080 Hb_002498_050--Hb_028707_080 Hb_002192_030 Hb_002192_030 Hb_002498_050--Hb_002192_030 Hb_009851_050 Hb_009851_050 Hb_002498_050--Hb_009851_050 Hb_000091_060 Hb_000091_060 Hb_002498_050--Hb_000091_060 Hb_000890_230 Hb_000890_230 Hb_002498_050--Hb_000890_230 Hb_013358_080--Hb_013358_090 Hb_081517_010 Hb_081517_010 Hb_013358_080--Hb_081517_010 Hb_013358_080--Hb_181328_010 Hb_001948_130 Hb_001948_130 Hb_013358_080--Hb_001948_130 Hb_111973_010 Hb_111973_010 Hb_013358_080--Hb_111973_010 Hb_074197_020 Hb_074197_020 Hb_013358_080--Hb_074197_020 Hb_000345_360--Hb_000990_090 Hb_000345_360--Hb_004223_290 Hb_000345_360--Hb_009529_030 Hb_002391_290 Hb_002391_290 Hb_000345_360--Hb_002391_290 Hb_041828_010 Hb_041828_010 Hb_000345_360--Hb_041828_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.496242 0.40388 0.153284 1.49036 0.815747 1.39456
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.29665 0 0.389682 0.633526 0.429546

CAGE analysis