Hb_005054_250

Information

Type -
Description -
Location Contig5054: 199763-201235
Sequence    

Annotation

kegg
ID pop:POPTR_0008s06520g
description POPTRDRAFT_1084572; transferase family protein
nr
ID XP_012087852.1
description PREDICTED: uncharacterized acetyltransferase At3g50280 [Jatropha curcas]
swissprot
ID Q9SND9
description Uncharacterized acetyltransferase At3g50280 OS=Arabidopsis thaliana GN=At3g50280 PE=3 SV=1
trembl
ID A0A067L8P7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01321 PE=4 SV=1
Gene Ontology
ID GO:0047672
description uncharacterized acetyltransferase at3g50280-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005054_250 0.0 - - PREDICTED: uncharacterized acetyltransferase At3g50280 [Jatropha curcas]
2 Hb_111881_030 0.2164401843 - - PREDICTED: uncharacterized protein LOC105645255 [Jatropha curcas]
3 Hb_034953_010 0.2298539683 - - hypothetical protein JCGZ_00031 [Jatropha curcas]
4 Hb_000035_420 0.2406961644 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
5 Hb_183193_010 0.251700179 - - gibberellin 20-oxidase, putative [Ricinus communis]
6 Hb_001956_190 0.2536883878 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
7 Hb_000003_760 0.2576839249 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA26-like [Jatropha curcas]
8 Hb_000003_430 0.2660475479 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
9 Hb_000975_370 0.2743136842 transcription factor TF Family: MYB PREDICTED: transcription factor MYB59 isoform X1 [Jatropha curcas]
10 Hb_000506_130 0.274526209 - - DGCR14-related family protein [Populus trichocarpa]
11 Hb_011416_020 0.2749545684 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004968_050 0.2750759847 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
13 Hb_125884_010 0.2768482104 - - PREDICTED: metalloendoproteinase 1-like [Jatropha curcas]
14 Hb_004143_050 0.2774979714 - - PREDICTED: uncharacterized protein LOC105630712 [Jatropha curcas]
15 Hb_001541_160 0.2810776385 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
16 Hb_000805_330 0.283351357 - - PREDICTED: ricin-like [Elaeis guineensis]
17 Hb_009421_050 0.2864622826 - - PREDICTED: uncharacterized protein LOC105647037 [Jatropha curcas]
18 Hb_000417_420 0.2869451877 - - PREDICTED: U-box domain-containing protein 17 [Jatropha curcas]
19 Hb_017434_020 0.2878356843 transcription factor TF Family: C2H2 Zinc finger protein 4 [Populus trichocarpa]
20 Hb_007304_100 0.2914087135 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Jatropha curcas]

Gene co-expression network

sample Hb_005054_250 Hb_005054_250 Hb_111881_030 Hb_111881_030 Hb_005054_250--Hb_111881_030 Hb_034953_010 Hb_034953_010 Hb_005054_250--Hb_034953_010 Hb_000035_420 Hb_000035_420 Hb_005054_250--Hb_000035_420 Hb_183193_010 Hb_183193_010 Hb_005054_250--Hb_183193_010 Hb_001956_190 Hb_001956_190 Hb_005054_250--Hb_001956_190 Hb_000003_760 Hb_000003_760 Hb_005054_250--Hb_000003_760 Hb_111881_030--Hb_001956_190 Hb_000003_430 Hb_000003_430 Hb_111881_030--Hb_000003_430 Hb_111881_030--Hb_000003_760 Hb_000506_130 Hb_000506_130 Hb_111881_030--Hb_000506_130 Hb_052113_020 Hb_052113_020 Hb_111881_030--Hb_052113_020 Hb_008725_190 Hb_008725_190 Hb_111881_030--Hb_008725_190 Hb_000342_120 Hb_000342_120 Hb_034953_010--Hb_000342_120 Hb_005588_130 Hb_005588_130 Hb_034953_010--Hb_005588_130 Hb_004730_010 Hb_004730_010 Hb_034953_010--Hb_004730_010 Hb_002004_010 Hb_002004_010 Hb_034953_010--Hb_002004_010 Hb_001699_030 Hb_001699_030 Hb_034953_010--Hb_001699_030 Hb_013691_060 Hb_013691_060 Hb_034953_010--Hb_013691_060 Hb_000245_270 Hb_000245_270 Hb_000035_420--Hb_000245_270 Hb_004143_050 Hb_004143_050 Hb_000035_420--Hb_004143_050 Hb_000035_420--Hb_000506_130 Hb_000172_080 Hb_000172_080 Hb_000035_420--Hb_000172_080 Hb_166155_010 Hb_166155_010 Hb_000035_420--Hb_166155_010 Hb_000035_420--Hb_034953_010 Hb_009252_140 Hb_009252_140 Hb_183193_010--Hb_009252_140 Hb_005474_050 Hb_005474_050 Hb_183193_010--Hb_005474_050 Hb_001814_100 Hb_001814_100 Hb_183193_010--Hb_001814_100 Hb_161045_010 Hb_161045_010 Hb_183193_010--Hb_161045_010 Hb_006501_140 Hb_006501_140 Hb_183193_010--Hb_006501_140 Hb_004162_030 Hb_004162_030 Hb_183193_010--Hb_004162_030 Hb_001956_190--Hb_000003_430 Hb_001956_190--Hb_000506_130 Hb_000270_770 Hb_000270_770 Hb_001956_190--Hb_000270_770 Hb_000336_190 Hb_000336_190 Hb_001956_190--Hb_000336_190 Hb_001956_190--Hb_000003_760 Hb_001787_070 Hb_001787_070 Hb_000003_760--Hb_001787_070 Hb_000003_760--Hb_000336_190 Hb_009557_050 Hb_009557_050 Hb_000003_760--Hb_009557_050 Hb_178658_010 Hb_178658_010 Hb_000003_760--Hb_178658_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.872015 9.19649 0.0538094 5.4106 0.133825 0.345766
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0318899 1.55548 0.423925 0.0100168 1.62582

CAGE analysis