Hb_004647_010

Information

Type -
Description -
Location Contig4647: 14575-25842
Sequence    

Annotation

kegg
ID rcu:RCOM_1494400
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.13)
nr
ID XP_002516046.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9LV48
description Proline-rich receptor-like protein kinase PERK1 OS=Arabidopsis thaliana GN=PERK1 PE=2 SV=1
trembl
ID B9RQM7
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494400 PE=3 SV=1
Gene Ontology
ID GO:0004672
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004647_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_000780_110 0.1556913463 - - cation-transporting atpase plant, putative [Ricinus communis]
3 Hb_003929_040 0.1630259306 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
4 Hb_004879_030 0.1701296368 - - PREDICTED: uncharacterized protein LOC105124685 [Populus euphratica]
5 Hb_152414_010 0.1767591254 desease resistance Gene Name: NB-ARC hypothetical protein PRUPE_ppa024232mg [Prunus persica]
6 Hb_000032_230 0.1804141432 transcription factor TF Family: ERF hypothetical protein JCGZ_20463 [Jatropha curcas]
7 Hb_003579_010 0.1805419624 - - cryptochrome 1.2 [Populus tremula]
8 Hb_000325_070 0.1854448341 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_002010_080 0.1895924613 - - PREDICTED: probable receptor-like protein kinase At1g11050 [Jatropha curcas]
10 Hb_006358_030 0.1913609125 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
11 Hb_036492_020 0.1917414656 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
12 Hb_000402_180 0.1928490291 - - PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]
13 Hb_002110_050 0.1928704641 - - conserved hypothetical protein [Ricinus communis]
14 Hb_134022_010 0.1934760659 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
15 Hb_090306_010 0.194993257 - - hypothetical protein POPTR_0007s02300g [Populus trichocarpa]
16 Hb_160576_010 0.1956568599 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
17 Hb_026415_010 0.1965152598 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
18 Hb_011457_080 0.1973232858 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
19 Hb_004945_050 0.200974384 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
20 Hb_000060_100 0.2031371605 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004647_010 Hb_004647_010 Hb_000780_110 Hb_000780_110 Hb_004647_010--Hb_000780_110 Hb_003929_040 Hb_003929_040 Hb_004647_010--Hb_003929_040 Hb_004879_030 Hb_004879_030 Hb_004647_010--Hb_004879_030 Hb_152414_010 Hb_152414_010 Hb_004647_010--Hb_152414_010 Hb_000032_230 Hb_000032_230 Hb_004647_010--Hb_000032_230 Hb_003579_010 Hb_003579_010 Hb_004647_010--Hb_003579_010 Hb_000780_110--Hb_000032_230 Hb_002110_050 Hb_002110_050 Hb_000780_110--Hb_002110_050 Hb_004241_100 Hb_004241_100 Hb_000780_110--Hb_004241_100 Hb_008948_110 Hb_008948_110 Hb_000780_110--Hb_008948_110 Hb_005694_150 Hb_005694_150 Hb_000780_110--Hb_005694_150 Hb_160576_010 Hb_160576_010 Hb_000780_110--Hb_160576_010 Hb_000402_180 Hb_000402_180 Hb_003929_040--Hb_000402_180 Hb_036492_020 Hb_036492_020 Hb_003929_040--Hb_036492_020 Hb_006358_030 Hb_006358_030 Hb_003929_040--Hb_006358_030 Hb_003811_030 Hb_003811_030 Hb_003929_040--Hb_003811_030 Hb_070613_010 Hb_070613_010 Hb_003929_040--Hb_070613_010 Hb_134022_010 Hb_134022_010 Hb_003929_040--Hb_134022_010 Hb_026415_010 Hb_026415_010 Hb_004879_030--Hb_026415_010 Hb_004879_030--Hb_152414_010 Hb_115114_010 Hb_115114_010 Hb_004879_030--Hb_115114_010 Hb_000325_070 Hb_000325_070 Hb_004879_030--Hb_000325_070 Hb_009557_080 Hb_009557_080 Hb_004879_030--Hb_009557_080 Hb_004879_030--Hb_006358_030 Hb_152414_010--Hb_006358_030 Hb_152414_010--Hb_115114_010 Hb_152414_010--Hb_036492_020 Hb_152414_010--Hb_026415_010 Hb_152414_010--Hb_003929_040 Hb_000032_230--Hb_160576_010 Hb_000032_230--Hb_002110_050 Hb_001956_160 Hb_001956_160 Hb_000032_230--Hb_001956_160 Hb_000032_230--Hb_004241_100 Hb_002548_020 Hb_002548_020 Hb_000032_230--Hb_002548_020 Hb_000140_220 Hb_000140_220 Hb_003579_010--Hb_000140_220 Hb_003073_040 Hb_003073_040 Hb_003579_010--Hb_003073_040 Hb_132259_010 Hb_132259_010 Hb_003579_010--Hb_132259_010 Hb_000015_230 Hb_000015_230 Hb_003579_010--Hb_000015_230 Hb_003579_010--Hb_115114_010 Hb_000049_290 Hb_000049_290 Hb_003579_010--Hb_000049_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00807076 0.085181 0.0302228 0.0239785 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0306197

CAGE analysis