Hb_004128_160

Information

Type -
Description -
Location Contig4128: 125010-125804
Sequence    

Annotation

kegg
ID cit:102627523
description putative ribonuclease H protein At1g65750-like
nr
ID XP_012078525.1
description PREDICTED: uncharacterized protein LOC105639161 [Jatropha curcas]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID M5XIH1
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015647mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40869: 126194-126331
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004128_160 0.0 - - PREDICTED: uncharacterized protein LOC105639161 [Jatropha curcas]
2 Hb_003053_080 0.1613945735 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001951_040 0.1686226109 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
4 Hb_000282_110 0.1722430543 transcription factor TF Family: C2C2-GATA hypothetical protein POPTR_0006s24560g [Populus trichocarpa]
5 Hb_003653_030 0.175057128 - - nucleic acid binding protein, putative [Ricinus communis]
6 Hb_007594_020 0.1751120565 - - hypothetical protein JCGZ_18350 [Jatropha curcas]
7 Hb_000029_150 0.17535321 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007416_250 0.1756707487 - - -
9 Hb_005736_030 0.1756842389 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
10 Hb_013405_240 0.1758962577 - - Hydroxyproline-rich glycoprotein family protein [Theobroma cacao]
11 Hb_013818_020 0.1766201934 - - hypothetical protein POPTR_0005s21070g [Populus trichocarpa]
12 Hb_000186_160 0.1768571653 - - hypothetical protein POPTR_0011s01120g [Populus trichocarpa]
13 Hb_000762_050 0.1773791722 - - PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
14 Hb_000704_020 0.1787329618 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004712_230 0.1788070151 - - PREDICTED: retrotransposon-like protein 1 [Jatropha curcas]
16 Hb_003208_010 0.1807005778 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
17 Hb_000243_190 0.1816214045 transcription factor TF Family: MIKC flowering-related B-class MADS-box protein [Vitis vinifera]
18 Hb_020805_090 0.1840608557 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
19 Hb_028960_010 0.1841844425 - - phosphoglycerate kinase, putative [Ricinus communis]
20 Hb_016334_010 0.1842012726 - - hypothetical protein JCGZ_01311 [Jatropha curcas]

Gene co-expression network

sample Hb_004128_160 Hb_004128_160 Hb_003053_080 Hb_003053_080 Hb_004128_160--Hb_003053_080 Hb_001951_040 Hb_001951_040 Hb_004128_160--Hb_001951_040 Hb_000282_110 Hb_000282_110 Hb_004128_160--Hb_000282_110 Hb_003653_030 Hb_003653_030 Hb_004128_160--Hb_003653_030 Hb_007594_020 Hb_007594_020 Hb_004128_160--Hb_007594_020 Hb_000029_150 Hb_000029_150 Hb_004128_160--Hb_000029_150 Hb_007044_020 Hb_007044_020 Hb_003053_080--Hb_007044_020 Hb_032631_060 Hb_032631_060 Hb_003053_080--Hb_032631_060 Hb_000923_030 Hb_000923_030 Hb_003053_080--Hb_000923_030 Hb_001135_170 Hb_001135_170 Hb_003053_080--Hb_001135_170 Hb_011344_030 Hb_011344_030 Hb_003053_080--Hb_011344_030 Hb_001104_080 Hb_001104_080 Hb_003053_080--Hb_001104_080 Hb_005736_030 Hb_005736_030 Hb_001951_040--Hb_005736_030 Hb_001135_190 Hb_001135_190 Hb_001951_040--Hb_001135_190 Hb_020805_090 Hb_020805_090 Hb_001951_040--Hb_020805_090 Hb_004631_020 Hb_004631_020 Hb_001951_040--Hb_004631_020 Hb_007122_010 Hb_007122_010 Hb_001951_040--Hb_007122_010 Hb_004855_030 Hb_004855_030 Hb_001951_040--Hb_004855_030 Hb_013818_020 Hb_013818_020 Hb_000282_110--Hb_013818_020 Hb_007416_250 Hb_007416_250 Hb_000282_110--Hb_007416_250 Hb_013405_240 Hb_013405_240 Hb_000282_110--Hb_013405_240 Hb_003208_010 Hb_003208_010 Hb_000282_110--Hb_003208_010 Hb_000762_050 Hb_000762_050 Hb_000282_110--Hb_000762_050 Hb_003251_010 Hb_003251_010 Hb_000282_110--Hb_003251_010 Hb_004116_030 Hb_004116_030 Hb_003653_030--Hb_004116_030 Hb_003653_030--Hb_032631_060 Hb_003653_030--Hb_000762_050 Hb_001038_020 Hb_001038_020 Hb_003653_030--Hb_001038_020 Hb_003653_030--Hb_001104_080 Hb_000003_530 Hb_000003_530 Hb_003653_030--Hb_000003_530 Hb_043327_010 Hb_043327_010 Hb_007594_020--Hb_043327_010 Hb_005171_020 Hb_005171_020 Hb_007594_020--Hb_005171_020 Hb_002997_060 Hb_002997_060 Hb_007594_020--Hb_002997_060 Hb_006272_010 Hb_006272_010 Hb_007594_020--Hb_006272_010 Hb_000504_220 Hb_000504_220 Hb_007594_020--Hb_000504_220 Hb_001089_120 Hb_001089_120 Hb_007594_020--Hb_001089_120 Hb_000029_150--Hb_013405_240 Hb_000243_190 Hb_000243_190 Hb_000029_150--Hb_000243_190 Hb_000029_150--Hb_007416_250 Hb_000029_150--Hb_005736_030 Hb_132840_050 Hb_132840_050 Hb_000029_150--Hb_132840_050 Hb_000029_150--Hb_013818_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.675029 0.341363 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.121437 0 0.163602 0 3.43369

CAGE analysis