Hb_003952_130

Information

Type -
Description -
Location Contig3952: 106888-108807
Sequence    

Annotation

kegg
ID rcu:RCOM_1351700
description serine-threonine protein kinase, plant-type, putative (EC:2.7.10.2)
nr
ID XP_012082521.1
description PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
swissprot
ID Q9LZM4
description Wall-associated receptor kinase-like 20 OS=Arabidopsis thaliana GN=WAKL20 PE=2 SV=1
trembl
ID B9S095
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1351700 PE=3 SV=1
Gene Ontology
ID GO:0003755
description wall-associated receptor kinase-like 20

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39555: 107365-107657
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003952_130 0.0 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
2 Hb_009476_160 0.169544441 - - RING-H2 finger protein ATL2N, putative [Ricinus communis]
3 Hb_002004_010 0.1706523772 - - CBL-interacting protein kinase 9 [Populus trichocarpa]
4 Hb_005588_130 0.1743966529 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001699_030 0.1768375446 transcription factor TF Family: Orphans PREDICTED: histidine kinase 1 isoform X1 [Jatropha curcas]
6 Hb_004013_020 0.1809110996 - - PREDICTED: F-box protein SKIP2 [Jatropha curcas]
7 Hb_002311_110 0.1956773763 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000342_120 0.1997526966 - - PREDICTED: probable protein phosphatase 2C 72 [Jatropha curcas]
9 Hb_000103_420 0.1999313372 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Populus euphratica]
10 Hb_002066_010 0.2014701802 - - PREDICTED: acetylglutamate kinase, chloroplastic [Jatropha curcas]
11 Hb_002849_110 0.2020277615 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
12 Hb_001541_160 0.2020825831 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
13 Hb_000975_370 0.2027309287 transcription factor TF Family: MYB PREDICTED: transcription factor MYB59 isoform X1 [Jatropha curcas]
14 Hb_000836_210 0.2029871048 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
15 Hb_003175_090 0.204882808 - - hypothetical protein POPTR_0011s01120g [Populus trichocarpa]
16 Hb_000742_260 0.2056224269 - - hypothetical protein RCOM_1336320 [Ricinus communis]
17 Hb_000797_060 0.2061924756 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
18 Hb_000109_190 0.2066255833 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
19 Hb_002973_030 0.2082872722 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
20 Hb_006185_040 0.2089517382 - - PREDICTED: verprolin [Jatropha curcas]

Gene co-expression network

sample Hb_003952_130 Hb_003952_130 Hb_009476_160 Hb_009476_160 Hb_003952_130--Hb_009476_160 Hb_002004_010 Hb_002004_010 Hb_003952_130--Hb_002004_010 Hb_005588_130 Hb_005588_130 Hb_003952_130--Hb_005588_130 Hb_001699_030 Hb_001699_030 Hb_003952_130--Hb_001699_030 Hb_004013_020 Hb_004013_020 Hb_003952_130--Hb_004013_020 Hb_002311_110 Hb_002311_110 Hb_003952_130--Hb_002311_110 Hb_004282_040 Hb_004282_040 Hb_009476_160--Hb_004282_040 Hb_000638_180 Hb_000638_180 Hb_009476_160--Hb_000638_180 Hb_000692_230 Hb_000692_230 Hb_009476_160--Hb_000692_230 Hb_004586_230 Hb_004586_230 Hb_009476_160--Hb_004586_230 Hb_009476_160--Hb_002004_010 Hb_001016_040 Hb_001016_040 Hb_009476_160--Hb_001016_040 Hb_002973_030 Hb_002973_030 Hb_002004_010--Hb_002973_030 Hb_013405_100 Hb_013405_100 Hb_002004_010--Hb_013405_100 Hb_001541_160 Hb_001541_160 Hb_002004_010--Hb_001541_160 Hb_050847_030 Hb_050847_030 Hb_002004_010--Hb_050847_030 Hb_002004_010--Hb_002311_110 Hb_002849_110 Hb_002849_110 Hb_002004_010--Hb_002849_110 Hb_000172_070 Hb_000172_070 Hb_005588_130--Hb_000172_070 Hb_004730_010 Hb_004730_010 Hb_005588_130--Hb_004730_010 Hb_003175_090 Hb_003175_090 Hb_005588_130--Hb_003175_090 Hb_000342_120 Hb_000342_120 Hb_005588_130--Hb_000342_120 Hb_020301_010 Hb_020301_010 Hb_005588_130--Hb_020301_010 Hb_005588_130--Hb_001699_030 Hb_001699_030--Hb_003175_090 Hb_001699_030--Hb_020301_010 Hb_001178_040 Hb_001178_040 Hb_001699_030--Hb_001178_040 Hb_001699_030--Hb_002311_110 Hb_001699_030--Hb_004282_040 Hb_000753_120 Hb_000753_120 Hb_004013_020--Hb_000753_120 Hb_000975_370 Hb_000975_370 Hb_004013_020--Hb_000975_370 Hb_000836_600 Hb_000836_600 Hb_004013_020--Hb_000836_600 Hb_000230_470 Hb_000230_470 Hb_004013_020--Hb_000230_470 Hb_000065_090 Hb_000065_090 Hb_004013_020--Hb_000065_090 Hb_004013_020--Hb_001541_160 Hb_178658_010 Hb_178658_010 Hb_002311_110--Hb_178658_010 Hb_000836_210 Hb_000836_210 Hb_002311_110--Hb_000836_210 Hb_002311_110--Hb_002849_110 Hb_000666_120 Hb_000666_120 Hb_002311_110--Hb_000666_120 Hb_005656_160 Hb_005656_160 Hb_002311_110--Hb_005656_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.168317 2.64912 0.411419 2.34169 0.414578 0.0301204
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0929084 0.211182 0.177493 1.05898

CAGE analysis