Hb_002395_020

Information

Type -
Description -
Location Contig2395: 36068-37398
Sequence    

Annotation

kegg
ID rcu:RCOM_0852680
description Protein CREG1 precursor, putative
nr
ID XP_002517410.1
description Protein CREG1 precursor, putative [Ricinus communis]
swissprot
ID Q8IUH2
description Protein CREG2 OS=Homo sapiens GN=CREG2 PE=1 SV=1
trembl
ID B9RUG5
description Protein CREG1, putative OS=Ricinus communis GN=RCOM_0852680 PE=4 SV=1
Gene Ontology
ID GO:0010181
description protein creg1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25089: 36099-37478
cDNA
(Sanger)
(ID:Location)		 031_E11.ab1: 36099-37478 , 038_G23.ab1: 36099-37478 , 047_J22.ab1: 36099-37478

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002395_020 0.0 - - Protein CREG1 precursor, putative [Ricinus communis]
2 Hb_002110_110 0.1375342943 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
3 Hb_000032_020 0.166146049 - - Centromeric protein E, putative [Ricinus communis]
4 Hb_000221_180 0.1682764849 - - VQ motif-containing family protein [Populus trichocarpa]
5 Hb_001221_360 0.1723563692 - - late embryogenesis abundant, putative [Ricinus communis]
6 Hb_010565_030 0.1747673662 - - hypothetical protein VITISV_006810 [Vitis vinifera]
7 Hb_000175_270 0.175848697 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
8 Hb_005155_010 0.1781827649 - - amino acid transporter, putative [Ricinus communis]
9 Hb_005542_010 0.1797953369 - - Uncharacterized protein TCM_021447 [Theobroma cacao]
10 Hb_003517_090 0.1798222441 - - PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas]
11 Hb_001230_020 0.1875287362 - - hypothetical protein POPTR_0001s31610g [Populus trichocarpa]
12 Hb_003020_300 0.1880955582 - - conserved hypothetical protein [Ricinus communis]
13 Hb_027337_030 0.1901437368 - - PREDICTED: uncharacterized protein LOC104602841 [Nelumbo nucifera]
14 Hb_000366_030 0.1908000068 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Jatropha curcas]
15 Hb_061908_020 0.1938418014 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
16 Hb_001866_090 0.1940344272 - - hypothetical protein VITISV_023491 [Vitis vinifera]
17 Hb_011472_050 0.1949688098 - - -
18 Hb_010921_020 0.1960369032 - - PREDICTED: cyclin-SDS [Jatropha curcas]
19 Hb_000757_020 0.1960596266 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
20 Hb_042463_060 0.1964330423 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002395_020 Hb_002395_020 Hb_002110_110 Hb_002110_110 Hb_002395_020--Hb_002110_110 Hb_000032_020 Hb_000032_020 Hb_002395_020--Hb_000032_020 Hb_000221_180 Hb_000221_180 Hb_002395_020--Hb_000221_180 Hb_001221_360 Hb_001221_360 Hb_002395_020--Hb_001221_360 Hb_010565_030 Hb_010565_030 Hb_002395_020--Hb_010565_030 Hb_000175_270 Hb_000175_270 Hb_002395_020--Hb_000175_270 Hb_002110_110--Hb_000032_020 Hb_005542_010 Hb_005542_010 Hb_002110_110--Hb_005542_010 Hb_000879_030 Hb_000879_030 Hb_002110_110--Hb_000879_030 Hb_001405_230 Hb_001405_230 Hb_002110_110--Hb_001405_230 Hb_002110_110--Hb_010565_030 Hb_011472_050 Hb_011472_050 Hb_002110_110--Hb_011472_050 Hb_000032_020--Hb_000879_030 Hb_000032_020--Hb_000221_180 Hb_073973_020 Hb_073973_020 Hb_000032_020--Hb_073973_020 Hb_000032_020--Hb_000175_270 Hb_000032_020--Hb_005542_010 Hb_014006_010 Hb_014006_010 Hb_000221_180--Hb_014006_010 Hb_000221_180--Hb_073973_020 Hb_000221_180--Hb_000175_270 Hb_001496_120 Hb_001496_120 Hb_000221_180--Hb_001496_120 Hb_001307_200 Hb_001307_200 Hb_000221_180--Hb_001307_200 Hb_013399_090 Hb_013399_090 Hb_000221_180--Hb_013399_090 Hb_006940_020 Hb_006940_020 Hb_001221_360--Hb_006940_020 Hb_000997_140 Hb_000997_140 Hb_001221_360--Hb_000997_140 Hb_001221_360--Hb_010565_030 Hb_003029_140 Hb_003029_140 Hb_001221_360--Hb_003029_140 Hb_140389_010 Hb_140389_010 Hb_001221_360--Hb_140389_010 Hb_007576_150 Hb_007576_150 Hb_001221_360--Hb_007576_150 Hb_010565_030--Hb_005542_010 Hb_010565_030--Hb_011472_050 Hb_000173_110 Hb_000173_110 Hb_010565_030--Hb_000173_110 Hb_011609_210 Hb_011609_210 Hb_010565_030--Hb_011609_210 Hb_000123_340 Hb_000123_340 Hb_010565_030--Hb_000123_340 Hb_187005_010 Hb_187005_010 Hb_000175_270--Hb_187005_010 Hb_001499_070 Hb_001499_070 Hb_000175_270--Hb_001499_070 Hb_000175_270--Hb_014006_010 Hb_019863_060 Hb_019863_060 Hb_000175_270--Hb_019863_060 Hb_000340_360 Hb_000340_360 Hb_000175_270--Hb_000340_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.933807 12.2926 2.36005 3.17373 0.630433 1.86839
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.722174 1.22943 0.162322 3.79155 13.9871

CAGE analysis