Hb_001366_080

Information

Type transcription factor
Description TF Family: NAC
Location Contig1366: 82007-82911
Sequence    

Annotation

kegg
ID rcu:RCOM_1340970
description hypothetical protein
nr
ID AGL39724.1
description NAC transcription factor 068 [Jatropha curcas]
swissprot
ID F4JN35
description Protein NTM1-like 9 OS=Arabidopsis thaliana GN=NTL9 PE=1 SV=1
trembl
ID R4NFZ8
description NAC transcription factor 068 OS=Jatropha curcas GN=JCGZ_14164 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 45-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001366_080 0.0 transcription factor TF Family: NAC NAC transcription factor 068 [Jatropha curcas]
2 Hb_001047_150 0.2534081301 - - PREDICTED: NF-kappa-B-activating protein [Jatropha curcas]
3 Hb_168978_020 0.2694112685 - - hypothetical protein POPTR_0002s10960g [Populus trichocarpa]
4 Hb_001865_080 0.2726132748 - - enoyl-CoA hydratase/isomerase family protein [Populus trichocarpa]
5 Hb_000086_060 0.2763372015 - - PREDICTED: TOM1-like protein 2 isoform X2 [Populus euphratica]
6 Hb_148891_010 0.278183642 - - -
7 Hb_009493_010 0.2796879723 - - Minor allergen Alt a, putative [Ricinus communis]
8 Hb_010174_010 0.285650473 - - PREDICTED: protein terminal ear1 [Jatropha curcas]
9 Hb_002175_040 0.28607865 - - PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
10 Hb_000275_180 0.2871565118 - - -
11 Hb_115241_010 0.2933731589 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
12 Hb_011242_030 0.2953138378 - - -
13 Hb_000261_440 0.3008564653 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
14 Hb_026428_010 0.3046776132 - - copper transport protein ATOX1 [Hevea brasiliensis]
15 Hb_003906_100 0.3051342337 - - hypothetical protein JCGZ_26174 [Jatropha curcas]
16 Hb_002341_020 0.3064787044 - - PREDICTED: pyruvate decarboxylase 2 [Populus euphratica]
17 Hb_001959_040 0.3068330445 - - PREDICTED: beta-amylase 1, chloroplastic [Jatropha curcas]
18 Hb_001495_060 0.3076390023 - - PREDICTED: probable aldo-keto reductase 1 [Jatropha curcas]
19 Hb_010883_100 0.3078849159 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105638892 [Jatropha curcas]
20 Hb_001541_270 0.3086197875 - - PREDICTED: uncharacterized protein LOC105644666 [Jatropha curcas]

Gene co-expression network

sample Hb_001366_080 Hb_001366_080 Hb_001047_150 Hb_001047_150 Hb_001366_080--Hb_001047_150 Hb_168978_020 Hb_168978_020 Hb_001366_080--Hb_168978_020 Hb_001865_080 Hb_001865_080 Hb_001366_080--Hb_001865_080 Hb_000086_060 Hb_000086_060 Hb_001366_080--Hb_000086_060 Hb_148891_010 Hb_148891_010 Hb_001366_080--Hb_148891_010 Hb_009493_010 Hb_009493_010 Hb_001366_080--Hb_009493_010 Hb_174865_030 Hb_174865_030 Hb_001047_150--Hb_174865_030 Hb_115241_010 Hb_115241_010 Hb_001047_150--Hb_115241_010 Hb_002929_050 Hb_002929_050 Hb_001047_150--Hb_002929_050 Hb_011689_040 Hb_011689_040 Hb_001047_150--Hb_011689_040 Hb_000987_120 Hb_000987_120 Hb_001047_150--Hb_000987_120 Hb_001047_150--Hb_000086_060 Hb_001564_080 Hb_001564_080 Hb_168978_020--Hb_001564_080 Hb_000975_360 Hb_000975_360 Hb_168978_020--Hb_000975_360 Hb_005551_050 Hb_005551_050 Hb_168978_020--Hb_005551_050 Hb_004324_300 Hb_004324_300 Hb_168978_020--Hb_004324_300 Hb_000805_110 Hb_000805_110 Hb_168978_020--Hb_000805_110 Hb_007426_180 Hb_007426_180 Hb_168978_020--Hb_007426_180 Hb_000230_270 Hb_000230_270 Hb_001865_080--Hb_000230_270 Hb_002636_080 Hb_002636_080 Hb_001865_080--Hb_002636_080 Hb_000109_240 Hb_000109_240 Hb_001865_080--Hb_000109_240 Hb_000317_400 Hb_000317_400 Hb_001865_080--Hb_000317_400 Hb_002301_360 Hb_002301_360 Hb_001865_080--Hb_002301_360 Hb_001439_100 Hb_001439_100 Hb_001865_080--Hb_001439_100 Hb_000221_210 Hb_000221_210 Hb_000086_060--Hb_000221_210 Hb_005941_040 Hb_005941_040 Hb_000086_060--Hb_005941_040 Hb_000261_440 Hb_000261_440 Hb_000086_060--Hb_000261_440 Hb_000086_060--Hb_000987_120 Hb_005653_060 Hb_005653_060 Hb_000086_060--Hb_005653_060 Hb_000212_350 Hb_000212_350 Hb_000086_060--Hb_000212_350 Hb_000445_190 Hb_000445_190 Hb_148891_010--Hb_000445_190 Hb_004102_030 Hb_004102_030 Hb_148891_010--Hb_004102_030 Hb_001017_080 Hb_001017_080 Hb_148891_010--Hb_001017_080 Hb_004931_010 Hb_004931_010 Hb_148891_010--Hb_004931_010 Hb_000803_040 Hb_000803_040 Hb_148891_010--Hb_000803_040 Hb_001495_060 Hb_001495_060 Hb_148891_010--Hb_001495_060 Hb_023536_010 Hb_023536_010 Hb_009493_010--Hb_023536_010 Hb_010897_030 Hb_010897_030 Hb_009493_010--Hb_010897_030 Hb_002909_060 Hb_002909_060 Hb_009493_010--Hb_002909_060 Hb_002600_100 Hb_002600_100 Hb_009493_010--Hb_002600_100 Hb_003893_090 Hb_003893_090 Hb_009493_010--Hb_003893_090 Hb_000635_140 Hb_000635_140 Hb_009493_010--Hb_000635_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.794736 1.60478 0.573823 0.285594 0.435182 0.036079
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.32322 0.812566 0.520371 0.332309 0

CAGE analysis