Hb_001189_090

Information

Type -
Description -
Location Contig1189: 62861-66958
Sequence    

Annotation

kegg
ID rcu:RCOM_1341420
description carbon catabolite repressor protein, putative
nr
ID XP_002515120.1
description carbon catabolite repressor protein, putative [Ricinus communis]
swissprot
ID O81916
description Uncharacterized calcium-binding protein At1g02270 OS=Arabidopsis thaliana GN=At1g02270 PE=2 SV=2
trembl
ID B9RMY1
description Carbon catabolite repressor protein, putative OS=Ricinus communis GN=RCOM_1341420 PE=4 SV=1
Gene Ontology
ID GO:0005634
description uncharacterized calcium-binding protein at1g02270-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05589: 62877-64247 , PASA_asmbl_05590: 64278-65938 , PASA_asmbl_05591: 65939-66959
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001189_090 0.0 - - carbon catabolite repressor protein, putative [Ricinus communis]
2 Hb_000006_010 0.0799785886 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001009_320 0.0852122627 - - PREDICTED: uncharacterized protein LOC105640250 [Jatropha curcas]
4 Hb_000152_360 0.088043525 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP53 [Jatropha curcas]
5 Hb_000139_260 0.0933720521 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
6 Hb_000161_040 0.0945235723 - - PREDICTED: protein EI24 homolog [Jatropha curcas]
7 Hb_000522_170 0.1001918712 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 1 [Jatropha curcas]
8 Hb_000258_070 0.1006746805 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
9 Hb_002301_300 0.1020670213 - - PREDICTED: dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X1 [Jatropha curcas]
10 Hb_139002_010 0.103998197 - - alpha-(1,4)-fucosyltransferase, putative [Ricinus communis]
11 Hb_021419_030 0.1046118997 - - hypothetical protein glysoja_023295 [Glycine soja]
12 Hb_000347_430 0.1070003079 - - PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-A [Jatropha curcas]
13 Hb_033286_010 0.1070276101 - - PREDICTED: probable beta-1,3-galactosyltransferase 14 [Jatropha curcas]
14 Hb_001512_040 0.1098159505 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
15 Hb_012518_070 0.1104363145 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Jatropha curcas]
16 Hb_002374_370 0.1104453123 - - protein with unknown function [Ricinus communis]
17 Hb_000336_210 0.1134615454 - - PREDICTED: probable adenylate kinase 7, mitochondrial [Jatropha curcas]
18 Hb_000676_070 0.1134629988 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
19 Hb_000667_030 0.1136209378 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
20 Hb_027380_060 0.113885257 - - PREDICTED: putative ALA-interacting subunit 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001189_090 Hb_001189_090 Hb_000006_010 Hb_000006_010 Hb_001189_090--Hb_000006_010 Hb_001009_320 Hb_001009_320 Hb_001189_090--Hb_001009_320 Hb_000152_360 Hb_000152_360 Hb_001189_090--Hb_000152_360 Hb_000139_260 Hb_000139_260 Hb_001189_090--Hb_000139_260 Hb_000161_040 Hb_000161_040 Hb_001189_090--Hb_000161_040 Hb_000522_170 Hb_000522_170 Hb_001189_090--Hb_000522_170 Hb_000006_010--Hb_001009_320 Hb_000006_010--Hb_000139_260 Hb_023313_040 Hb_023313_040 Hb_000006_010--Hb_023313_040 Hb_000803_270 Hb_000803_270 Hb_000006_010--Hb_000803_270 Hb_000006_010--Hb_000522_170 Hb_000336_210 Hb_000336_210 Hb_000006_010--Hb_000336_210 Hb_000477_050 Hb_000477_050 Hb_001009_320--Hb_000477_050 Hb_001009_320--Hb_000522_170 Hb_000120_280 Hb_000120_280 Hb_001009_320--Hb_000120_280 Hb_015807_050 Hb_015807_050 Hb_001009_320--Hb_015807_050 Hb_000313_220 Hb_000313_220 Hb_001009_320--Hb_000313_220 Hb_000152_360--Hb_001009_320 Hb_000340_530 Hb_000340_530 Hb_000152_360--Hb_000340_530 Hb_134362_010 Hb_134362_010 Hb_000152_360--Hb_134362_010 Hb_127743_010 Hb_127743_010 Hb_000152_360--Hb_127743_010 Hb_002989_020 Hb_002989_020 Hb_000152_360--Hb_002989_020 Hb_000011_100 Hb_000011_100 Hb_000152_360--Hb_000011_100 Hb_002014_040 Hb_002014_040 Hb_000139_260--Hb_002014_040 Hb_001005_030 Hb_001005_030 Hb_000139_260--Hb_001005_030 Hb_004912_030 Hb_004912_030 Hb_000139_260--Hb_004912_030 Hb_139002_010 Hb_139002_010 Hb_000139_260--Hb_139002_010 Hb_010272_010 Hb_010272_010 Hb_000139_260--Hb_010272_010 Hb_003097_070 Hb_003097_070 Hb_000161_040--Hb_003097_070 Hb_002728_080 Hb_002728_080 Hb_000161_040--Hb_002728_080 Hb_000116_450 Hb_000116_450 Hb_000161_040--Hb_000116_450 Hb_033286_010 Hb_033286_010 Hb_000161_040--Hb_033286_010 Hb_023313_030 Hb_023313_030 Hb_000161_040--Hb_023313_030 Hb_000258_070 Hb_000258_070 Hb_000161_040--Hb_000258_070 Hb_000317_470 Hb_000317_470 Hb_000522_170--Hb_000317_470 Hb_001221_080 Hb_001221_080 Hb_000522_170--Hb_001221_080 Hb_021419_030 Hb_021419_030 Hb_000522_170--Hb_021419_030 Hb_000522_170--Hb_000139_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.89431 4.18218 4.81497 6.55035 8.71154 3.21365
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.61408 4.94789 3.70796 4.22597 5.64502

CAGE analysis