Hb_001040_140

Information

Type -
Description -
Location Contig1040: 196756-198564
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001040_140 0.0 - - -
2 Hb_132840_140 0.2037446709 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
3 Hb_001143_220 0.2041402016 - - 20S proteasome beta subunit C2 [Hevea brasiliensis]
4 Hb_000139_430 0.2081315279 transcription factor TF Family: B3 PREDICTED: uncharacterized protein LOC104882266 isoform X2 [Vitis vinifera]
5 Hb_005653_080 0.2126406031 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
6 Hb_001776_220 0.2272158909 - - -
7 Hb_001512_050 0.22764394 - - copine, putative [Ricinus communis]
8 Hb_000565_030 0.2292129471 - - PREDICTED: 40S ribosomal protein S26-3-like [Jatropha curcas]
9 Hb_006028_020 0.2307187201 - - PREDICTED: 60S ribosomal protein L38-like [Cicer arietinum]
10 Hb_001754_250 0.233261683 - - PREDICTED: uncharacterized protein LOC105643411 [Jatropha curcas]
11 Hb_000096_170 0.2345125554 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Jatropha curcas]
12 Hb_000975_320 0.2352890501 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
13 Hb_004223_040 0.2361532202 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
14 Hb_000134_320 0.2380876015 - - hypothetical protein PRUPE_ppa013450mg [Prunus persica]
15 Hb_116349_110 0.2388839735 - - PREDICTED: vacuolar protein sorting-associated protein 25 [Jatropha curcas]
16 Hb_012368_020 0.2420821092 - - PREDICTED: uncharacterized protein LOC105650964 [Jatropha curcas]
17 Hb_009680_040 0.2423319352 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
18 Hb_001584_060 0.2440983624 - - PREDICTED: transcription factor bHLH149 [Jatropha curcas]
19 Hb_003058_080 0.2442101338 - - Chaperonin 10 isoform 1 [Theobroma cacao]
20 Hb_003641_020 0.2462670761 - - hypothetical protein POPTR_0006s13960g [Populus trichocarpa]

Gene co-expression network

sample Hb_001040_140 Hb_001040_140 Hb_132840_140 Hb_132840_140 Hb_001040_140--Hb_132840_140 Hb_001143_220 Hb_001143_220 Hb_001040_140--Hb_001143_220 Hb_000139_430 Hb_000139_430 Hb_001040_140--Hb_000139_430 Hb_005653_080 Hb_005653_080 Hb_001040_140--Hb_005653_080 Hb_001776_220 Hb_001776_220 Hb_001040_140--Hb_001776_220 Hb_001512_050 Hb_001512_050 Hb_001040_140--Hb_001512_050 Hb_001431_080 Hb_001431_080 Hb_132840_140--Hb_001431_080 Hb_000134_320 Hb_000134_320 Hb_132840_140--Hb_000134_320 Hb_000676_310 Hb_000676_310 Hb_132840_140--Hb_000676_310 Hb_004223_040 Hb_004223_040 Hb_132840_140--Hb_004223_040 Hb_001188_030 Hb_001188_030 Hb_132840_140--Hb_001188_030 Hb_015299_030 Hb_015299_030 Hb_132840_140--Hb_015299_030 Hb_000260_550 Hb_000260_550 Hb_001143_220--Hb_000260_550 Hb_168878_010 Hb_168878_010 Hb_001143_220--Hb_168878_010 Hb_001459_080 Hb_001459_080 Hb_001143_220--Hb_001459_080 Hb_007044_130 Hb_007044_130 Hb_001143_220--Hb_007044_130 Hb_002783_270 Hb_002783_270 Hb_001143_220--Hb_002783_270 Hb_001754_250 Hb_001754_250 Hb_001143_220--Hb_001754_250 Hb_006028_020 Hb_006028_020 Hb_000139_430--Hb_006028_020 Hb_000139_430--Hb_001512_050 Hb_027472_160 Hb_027472_160 Hb_000139_430--Hb_027472_160 Hb_000212_210 Hb_000212_210 Hb_000139_430--Hb_000212_210 Hb_007245_080 Hb_007245_080 Hb_000139_430--Hb_007245_080 Hb_002686_180 Hb_002686_180 Hb_000139_430--Hb_002686_180 Hb_003943_130 Hb_003943_130 Hb_005653_080--Hb_003943_130 Hb_000094_020 Hb_000094_020 Hb_005653_080--Hb_000094_020 Hb_000268_010 Hb_000268_010 Hb_005653_080--Hb_000268_010 Hb_012368_020 Hb_012368_020 Hb_005653_080--Hb_012368_020 Hb_001369_640 Hb_001369_640 Hb_005653_080--Hb_001369_640 Hb_002983_010 Hb_002983_010 Hb_005653_080--Hb_002983_010 Hb_000565_030 Hb_000565_030 Hb_001776_220--Hb_000565_030 Hb_000157_090 Hb_000157_090 Hb_001776_220--Hb_000157_090 Hb_143629_220 Hb_143629_220 Hb_001776_220--Hb_143629_220 Hb_000608_310 Hb_000608_310 Hb_001776_220--Hb_000608_310 Hb_001776_220--Hb_001143_220 Hb_000025_230 Hb_000025_230 Hb_001776_220--Hb_000025_230 Hb_001512_050--Hb_007245_080 Hb_116349_110 Hb_116349_110 Hb_001512_050--Hb_116349_110 Hb_000062_650 Hb_000062_650 Hb_001512_050--Hb_000062_650 Hb_000576_060 Hb_000576_060 Hb_001512_050--Hb_000576_060 Hb_002588_010 Hb_002588_010 Hb_001512_050--Hb_002588_010 Hb_001512_050--Hb_004223_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.166334 0.155374 0.290483 0.0839848 0.0418366 0.194125
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0964318 0.757918 0.133154 0.031026 0

CAGE analysis