Hb_005653_080

Information

Type -
Description -
Location Contig5653: 81061-84505
Sequence    

Annotation

kegg
ID rcu:RCOM_1279960
description Xylem serine proteinase 1 precursor, putative (EC:3.4.21.25)
nr
ID XP_002523782.1
description Xylem serine proteinase 1 precursor, putative [Ricinus communis]
swissprot
ID Q9ZSP5
description Subtilisin-like protease SBT5.3 OS=Arabidopsis thaliana GN=AIR3 PE=2 SV=1
trembl
ID B9SCR3
description Xylem serine proteinase 1, putative OS=Ricinus communis GN=RCOM_1279960 PE=4 SV=1
Gene Ontology
ID GO:0004252
description subtilisin-like protease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005653_080 0.0 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
2 Hb_003943_130 0.1363437709 - - PREDICTED: uncharacterized protein LOC105636341 [Jatropha curcas]
3 Hb_000094_020 0.1375646177 - - Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]
4 Hb_000268_010 0.1382760141 - - conserved hypothetical protein [Ricinus communis]
5 Hb_012368_020 0.138409553 - - PREDICTED: uncharacterized protein LOC105650964 [Jatropha curcas]
6 Hb_001369_640 0.1409944812 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
7 Hb_002983_010 0.1479024556 - - F-box family protein [Populus trichocarpa]
8 Hb_003641_020 0.1486558936 - - hypothetical protein POPTR_0006s13960g [Populus trichocarpa]
9 Hb_001538_090 0.1492299692 - - 40S ribosomal protein S29 [Morus notabilis]
10 Hb_014783_010 0.1500225676 - - cold-inducible RNA binding protein, putative [Ricinus communis]
11 Hb_003939_080 0.151610075 - - conserved hypothetical protein [Ricinus communis]
12 Hb_134949_020 0.1532169922 - - PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus]
13 Hb_002316_060 0.1535903644 - - PREDICTED: uncharacterized protein LOC105640410 [Jatropha curcas]
14 Hb_001314_100 0.1565610045 - - hypothetical protein POPTR_0001s01820g [Populus trichocarpa]
15 Hb_000186_190 0.1573491595 - - PREDICTED: uncharacterized protein At4g22160 [Jatropha curcas]
16 Hb_064264_010 0.1581230723 - - hypothetical protein [Zea mays]
17 Hb_003927_140 0.159417339 - - PREDICTED: nudix hydrolase 9 isoform X1 [Jatropha curcas]
18 Hb_001143_220 0.1599677231 - - 20S proteasome beta subunit C2 [Hevea brasiliensis]
19 Hb_002289_120 0.1612708631 - - PREDICTED: uncharacterized protein LOC105645218 isoform X2 [Jatropha curcas]
20 Hb_001512_070 0.1627591109 - - PREDICTED: ras-related protein RABB1b [Malus domestica]

Gene co-expression network

sample Hb_005653_080 Hb_005653_080 Hb_003943_130 Hb_003943_130 Hb_005653_080--Hb_003943_130 Hb_000094_020 Hb_000094_020 Hb_005653_080--Hb_000094_020 Hb_000268_010 Hb_000268_010 Hb_005653_080--Hb_000268_010 Hb_012368_020 Hb_012368_020 Hb_005653_080--Hb_012368_020 Hb_001369_640 Hb_001369_640 Hb_005653_080--Hb_001369_640 Hb_002983_010 Hb_002983_010 Hb_005653_080--Hb_002983_010 Hb_003943_130--Hb_001369_640 Hb_002289_120 Hb_002289_120 Hb_003943_130--Hb_002289_120 Hb_000152_420 Hb_000152_420 Hb_003943_130--Hb_000152_420 Hb_002316_060 Hb_002316_060 Hb_003943_130--Hb_002316_060 Hb_001538_090 Hb_001538_090 Hb_003943_130--Hb_001538_090 Hb_006909_030 Hb_006909_030 Hb_003943_130--Hb_006909_030 Hb_004297_100 Hb_004297_100 Hb_000094_020--Hb_004297_100 Hb_000094_020--Hb_002316_060 Hb_004807_060 Hb_004807_060 Hb_000094_020--Hb_004807_060 Hb_003746_060 Hb_003746_060 Hb_000094_020--Hb_003746_060 Hb_005611_010 Hb_005611_010 Hb_000094_020--Hb_005611_010 Hb_005496_030 Hb_005496_030 Hb_000094_020--Hb_005496_030 Hb_014783_010 Hb_014783_010 Hb_000268_010--Hb_014783_010 Hb_000268_010--Hb_003943_130 Hb_082407_010 Hb_082407_010 Hb_000268_010--Hb_082407_010 Hb_000268_010--Hb_004807_060 Hb_002742_050 Hb_002742_050 Hb_000268_010--Hb_002742_050 Hb_000268_010--Hb_002289_120 Hb_003641_020 Hb_003641_020 Hb_012368_020--Hb_003641_020 Hb_000975_320 Hb_000975_320 Hb_012368_020--Hb_000975_320 Hb_005511_160 Hb_005511_160 Hb_012368_020--Hb_005511_160 Hb_001314_100 Hb_001314_100 Hb_012368_020--Hb_001314_100 Hb_000062_650 Hb_000062_650 Hb_012368_020--Hb_000062_650 Hb_134949_020 Hb_134949_020 Hb_012368_020--Hb_134949_020 Hb_001369_640--Hb_000152_420 Hb_000690_180 Hb_000690_180 Hb_001369_640--Hb_000690_180 Hb_001369_640--Hb_001314_100 Hb_001369_640--Hb_002289_120 Hb_001369_640--Hb_134949_020 Hb_000780_060 Hb_000780_060 Hb_002983_010--Hb_000780_060 Hb_000084_290 Hb_000084_290 Hb_002983_010--Hb_000084_290 Hb_003687_110 Hb_003687_110 Hb_002983_010--Hb_003687_110 Hb_000349_060 Hb_000349_060 Hb_002983_010--Hb_000349_060 Hb_003939_080 Hb_003939_080 Hb_002983_010--Hb_003939_080 Hb_001369_660 Hb_001369_660 Hb_002983_010--Hb_001369_660
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0277047 0.0225783 0.0257025 0.0310755 0.0251341 0.0380284
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0388453 0.0916983 0.02908 0.006073 0

CAGE analysis