Hb_001776_220

Information

Type -
Description -
Location Contig1776: 168539-172930
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001776_220 0.0 - - -
2 Hb_000565_030 0.1765822427 - - PREDICTED: 40S ribosomal protein S26-3-like [Jatropha curcas]
3 Hb_000157_090 0.188884086 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
4 Hb_143629_220 0.1903232355 - - PREDICTED: hydrophobic protein LTI6B [Phoenix dactylifera]
5 Hb_000608_310 0.1923665416 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_001143_220 0.1935830988 - - 20S proteasome beta subunit C2 [Hevea brasiliensis]
7 Hb_000025_230 0.1944332132 - - PREDICTED: 10 kDa chaperonin [Vitis vinifera]
8 Hb_004531_070 0.1953061791 - - PREDICTED: cytochrome c oxidase assembly protein COX19-like [Jatropha curcas]
9 Hb_006831_130 0.1957153919 - - catalytic, putative [Ricinus communis]
10 Hb_001754_250 0.1959491961 - - PREDICTED: uncharacterized protein LOC105643411 [Jatropha curcas]
11 Hb_001314_100 0.197779824 - - hypothetical protein POPTR_0001s01820g [Populus trichocarpa]
12 Hb_004228_080 0.2003863878 - - phosphoethanolamine n-methyltransferase, putative [Ricinus communis]
13 Hb_001279_310 0.2014669191 - - hypothetical protein JCGZ_10212 [Jatropha curcas]
14 Hb_007432_030 0.2020694802 - - acyl-CoA thioesterase, putative [Ricinus communis]
15 Hb_000962_050 0.2050796553 - - PREDICTED: probable protein phosphatase 2C 68 [Jatropha curcas]
16 Hb_048476_100 0.2072293654 - - PREDICTED: glutathione S-transferase U9-like [Vitis vinifera]
17 Hb_000297_230 0.2079890211 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
18 Hb_168054_010 0.2085105133 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP18-1 [Elaeis guineensis]
19 Hb_144598_020 0.2096549791 - - PREDICTED: triphosphate tunel metalloenzyme 3 [Jatropha curcas]
20 Hb_000160_130 0.2100991489 - - PREDICTED: uncharacterized protein LOC105648215 [Jatropha curcas]

Gene co-expression network

sample Hb_001776_220 Hb_001776_220 Hb_000565_030 Hb_000565_030 Hb_001776_220--Hb_000565_030 Hb_000157_090 Hb_000157_090 Hb_001776_220--Hb_000157_090 Hb_143629_220 Hb_143629_220 Hb_001776_220--Hb_143629_220 Hb_000608_310 Hb_000608_310 Hb_001776_220--Hb_000608_310 Hb_001143_220 Hb_001143_220 Hb_001776_220--Hb_001143_220 Hb_000025_230 Hb_000025_230 Hb_001776_220--Hb_000025_230 Hb_000565_030--Hb_000157_090 Hb_009486_150 Hb_009486_150 Hb_000565_030--Hb_009486_150 Hb_004052_020 Hb_004052_020 Hb_000565_030--Hb_004052_020 Hb_002742_050 Hb_002742_050 Hb_000565_030--Hb_002742_050 Hb_012573_070 Hb_012573_070 Hb_000565_030--Hb_012573_070 Hb_001314_100 Hb_001314_100 Hb_000565_030--Hb_001314_100 Hb_033153_090 Hb_033153_090 Hb_000157_090--Hb_033153_090 Hb_001377_150 Hb_001377_150 Hb_000157_090--Hb_001377_150 Hb_004297_070 Hb_004297_070 Hb_000157_090--Hb_004297_070 Hb_168054_010 Hb_168054_010 Hb_000157_090--Hb_168054_010 Hb_000157_090--Hb_001314_100 Hb_005496_030 Hb_005496_030 Hb_143629_220--Hb_005496_030 Hb_001053_160 Hb_001053_160 Hb_143629_220--Hb_001053_160 Hb_002316_060 Hb_002316_060 Hb_143629_220--Hb_002316_060 Hb_000531_020 Hb_000531_020 Hb_143629_220--Hb_000531_020 Hb_143629_220--Hb_001314_100 Hb_000526_040 Hb_000526_040 Hb_143629_220--Hb_000526_040 Hb_001484_070 Hb_001484_070 Hb_000608_310--Hb_001484_070 Hb_007441_040 Hb_007441_040 Hb_000608_310--Hb_007441_040 Hb_009182_010 Hb_009182_010 Hb_000608_310--Hb_009182_010 Hb_003077_040 Hb_003077_040 Hb_000608_310--Hb_003077_040 Hb_001979_040 Hb_001979_040 Hb_000608_310--Hb_001979_040 Hb_000102_020 Hb_000102_020 Hb_000608_310--Hb_000102_020 Hb_000260_550 Hb_000260_550 Hb_001143_220--Hb_000260_550 Hb_168878_010 Hb_168878_010 Hb_001143_220--Hb_168878_010 Hb_001459_080 Hb_001459_080 Hb_001143_220--Hb_001459_080 Hb_007044_130 Hb_007044_130 Hb_001143_220--Hb_007044_130 Hb_002783_270 Hb_002783_270 Hb_001143_220--Hb_002783_270 Hb_001754_250 Hb_001754_250 Hb_001143_220--Hb_001754_250 Hb_000025_230--Hb_001459_080 Hb_003607_150 Hb_003607_150 Hb_000025_230--Hb_003607_150 Hb_008112_040 Hb_008112_040 Hb_000025_230--Hb_008112_040 Hb_000025_230--Hb_168878_010 Hb_002374_170 Hb_002374_170 Hb_000025_230--Hb_002374_170 Hb_011381_060 Hb_011381_060 Hb_000025_230--Hb_011381_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.81988 1.0888 4.62764 0.74296 0.335233 3.724
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.42445 5.88515 3.24387 0.738369 0.247994

CAGE analysis