Hb_000932_080

Information

Type -
Description -
Location Contig932: 99398-100008
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000932_080 0.0 - - -
2 Hb_018247_010 0.2232614934 - - hypothetical protein JCGZ_26531 [Jatropha curcas]
3 Hb_000243_020 0.2616576491 - - -
4 Hb_076038_010 0.2695486412 - - conserved hypothetical protein [Ricinus communis]
5 Hb_099046_010 0.2712577023 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
6 Hb_001493_010 0.2797742451 - - triacylglycerol acidic lipase TAL4 [Ricinus communis]
7 Hb_002205_100 0.2802165847 - - ATP binding protein, putative [Ricinus communis]
8 Hb_009476_140 0.2830591365 transcription factor TF Family: bHLH hypothetical protein RCOM_0838610 [Ricinus communis]
9 Hb_170487_010 0.2836159558 - - -
10 Hb_000086_100 0.2883649187 - - hypothetical protein POPTR_0005s24730g [Populus trichocarpa]
11 Hb_160203_010 0.2896007246 - - -
12 Hb_001832_160 0.2932835913 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002141_020 0.2936108079 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
14 Hb_103790_010 0.2967187298 - - PREDICTED: pre-mRNA-processing protein 40A isoform X4 [Jatropha curcas]
15 Hb_010831_020 0.3009335215 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
16 Hb_114839_010 0.3028094128 - - -
17 Hb_012305_040 0.305291158 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A-like [Jatropha curcas]
18 Hb_015354_010 0.3069297516 - - PREDICTED: B2 protein [Jatropha curcas]
19 Hb_156144_010 0.310328418 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9 [Jatropha curcas]
20 Hb_042404_010 0.3111663875 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000932_080 Hb_000932_080 Hb_018247_010 Hb_018247_010 Hb_000932_080--Hb_018247_010 Hb_000243_020 Hb_000243_020 Hb_000932_080--Hb_000243_020 Hb_076038_010 Hb_076038_010 Hb_000932_080--Hb_076038_010 Hb_099046_010 Hb_099046_010 Hb_000932_080--Hb_099046_010 Hb_001493_010 Hb_001493_010 Hb_000932_080--Hb_001493_010 Hb_002205_100 Hb_002205_100 Hb_000932_080--Hb_002205_100 Hb_042404_010 Hb_042404_010 Hb_018247_010--Hb_042404_010 Hb_000173_480 Hb_000173_480 Hb_018247_010--Hb_000173_480 Hb_070820_010 Hb_070820_010 Hb_018247_010--Hb_070820_010 Hb_004204_090 Hb_004204_090 Hb_018247_010--Hb_004204_090 Hb_009355_030 Hb_009355_030 Hb_018247_010--Hb_009355_030 Hb_000243_020--Hb_076038_010 Hb_001277_160 Hb_001277_160 Hb_000243_020--Hb_001277_160 Hb_000334_200 Hb_000334_200 Hb_000243_020--Hb_000334_200 Hb_002326_070 Hb_002326_070 Hb_000243_020--Hb_002326_070 Hb_001396_170 Hb_001396_170 Hb_000243_020--Hb_001396_170 Hb_076038_010--Hb_001277_160 Hb_100105_010 Hb_100105_010 Hb_076038_010--Hb_100105_010 Hb_001277_190 Hb_001277_190 Hb_076038_010--Hb_001277_190 Hb_001449_060 Hb_001449_060 Hb_076038_010--Hb_001449_060 Hb_075230_010 Hb_075230_010 Hb_076038_010--Hb_075230_010 Hb_170487_010 Hb_170487_010 Hb_099046_010--Hb_170487_010 Hb_000056_230 Hb_000056_230 Hb_099046_010--Hb_000056_230 Hb_000317_330 Hb_000317_330 Hb_099046_010--Hb_000317_330 Hb_004662_010 Hb_004662_010 Hb_099046_010--Hb_004662_010 Hb_002253_040 Hb_002253_040 Hb_099046_010--Hb_002253_040 Hb_001565_100 Hb_001565_100 Hb_099046_010--Hb_001565_100 Hb_010831_020 Hb_010831_020 Hb_001493_010--Hb_010831_020 Hb_000886_060 Hb_000886_060 Hb_001493_010--Hb_000886_060 Hb_181975_010 Hb_181975_010 Hb_001493_010--Hb_181975_010 Hb_000003_390 Hb_000003_390 Hb_001493_010--Hb_000003_390 Hb_001493_010--Hb_170487_010 Hb_001052_040 Hb_001052_040 Hb_001493_010--Hb_001052_040 Hb_002205_100--Hb_000334_200 Hb_116685_010 Hb_116685_010 Hb_002205_100--Hb_116685_010 Hb_090459_010 Hb_090459_010 Hb_002205_100--Hb_090459_010 Hb_001584_220 Hb_001584_220 Hb_002205_100--Hb_001584_220 Hb_002205_100--Hb_181975_010 Hb_001907_100 Hb_001907_100 Hb_002205_100--Hb_001907_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.67999 2.00206 0 1.2216 0.341358 2.38252
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.22518 0.64395 0 0 0

CAGE analysis