Hb_001277_160

Information

Type -
Description -
Location Contig1277: 152813-153469
Sequence    

Annotation

kegg
ID phu:Phum_PHUM036000
description plasma membrane ca-ATPase B2, putative (EC:3.6.3.8)
nr
ID EYU30746.1
description hypothetical protein MIMGU_mgv1a019742mg, partial [Erythranthe guttata]
swissprot
ID -
description -
trembl
ID K4B0C9
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc01g097420.1 PE=4 SV=1
Gene Ontology
ID GO:0016021
description calcium-transporting atpase plasma membrane-type

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001277_160 0.0 - - hypothetical protein MIMGU_mgv1a019742mg, partial [Erythranthe guttata]
2 Hb_076038_010 0.196281547 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000243_020 0.2147847483 - - -
4 Hb_001277_190 0.2413507385 - - hypothetical protein CICLE_v10005534mg [Citrus clementina]
5 Hb_001341_110 0.2542491302 - - PREDICTED: vicilin-like antimicrobial peptides 2-2 [Jatropha curcas]
6 Hb_007778_020 0.2695706134 - - -
7 Hb_004204_090 0.2704593607 - - hypothetical protein JCGZ_11697 [Jatropha curcas]
8 Hb_005565_010 0.2780878579 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
9 Hb_001096_100 0.2881598672 - - conserved hypothetical protein [Ricinus communis]
10 Hb_009222_020 0.2890766925 - - hypothetical protein AALP_AA5G087000 [Arabis alpina]
11 Hb_009393_180 0.2907856698 - - PREDICTED: uncharacterized protein LOC101292333 [Fragaria vesca subsp. vesca]
12 Hb_000826_060 0.293739263 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
13 Hb_025306_010 0.2941429682 transcription factor TF Family: MYB-related syringolide-induced protein 1-3-1B [Populus trichocarpa]
14 Hb_075230_010 0.2958622636 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Glycine max]
15 Hb_075449_020 0.2977609021 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
16 Hb_000987_130 0.2999328025 - - -
17 Hb_100105_010 0.3019131976 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
18 Hb_014720_170 0.302549649 - - glutaredoxin-1, grx1, putative [Ricinus communis]
19 Hb_006698_050 0.3027415375 - - Beta-glucosidase, putative [Ricinus communis]
20 Hb_007083_010 0.3030389571 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 13-like, partial [Nelumbo nucifera]

Gene co-expression network

sample Hb_001277_160 Hb_001277_160 Hb_076038_010 Hb_076038_010 Hb_001277_160--Hb_076038_010 Hb_000243_020 Hb_000243_020 Hb_001277_160--Hb_000243_020 Hb_001277_190 Hb_001277_190 Hb_001277_160--Hb_001277_190 Hb_001341_110 Hb_001341_110 Hb_001277_160--Hb_001341_110 Hb_007778_020 Hb_007778_020 Hb_001277_160--Hb_007778_020 Hb_004204_090 Hb_004204_090 Hb_001277_160--Hb_004204_090 Hb_076038_010--Hb_000243_020 Hb_100105_010 Hb_100105_010 Hb_076038_010--Hb_100105_010 Hb_076038_010--Hb_001277_190 Hb_001449_060 Hb_001449_060 Hb_076038_010--Hb_001449_060 Hb_075230_010 Hb_075230_010 Hb_076038_010--Hb_075230_010 Hb_000334_200 Hb_000334_200 Hb_000243_020--Hb_000334_200 Hb_002326_070 Hb_002326_070 Hb_000243_020--Hb_002326_070 Hb_000932_080 Hb_000932_080 Hb_000243_020--Hb_000932_080 Hb_001396_170 Hb_001396_170 Hb_000243_020--Hb_001396_170 Hb_001277_190--Hb_075230_010 Hb_095575_010 Hb_095575_010 Hb_001277_190--Hb_095575_010 Hb_002196_010 Hb_002196_010 Hb_001277_190--Hb_002196_010 Hb_127404_010 Hb_127404_010 Hb_001277_190--Hb_127404_010 Hb_003913_030 Hb_003913_030 Hb_001277_190--Hb_003913_030 Hb_012634_020 Hb_012634_020 Hb_001277_190--Hb_012634_020 Hb_021888_090 Hb_021888_090 Hb_001341_110--Hb_021888_090 Hb_001341_110--Hb_075230_010 Hb_001341_110--Hb_001277_190 Hb_000086_340 Hb_000086_340 Hb_001341_110--Hb_000086_340 Hb_005000_250 Hb_005000_250 Hb_001341_110--Hb_005000_250 Hb_000175_090 Hb_000175_090 Hb_007778_020--Hb_000175_090 Hb_000504_170 Hb_000504_170 Hb_007778_020--Hb_000504_170 Hb_000258_320 Hb_000258_320 Hb_007778_020--Hb_000258_320 Hb_014720_170 Hb_014720_170 Hb_007778_020--Hb_014720_170 Hb_007083_010 Hb_007083_010 Hb_007778_020--Hb_007083_010 Hb_003297_010 Hb_003297_010 Hb_007778_020--Hb_003297_010 Hb_042404_010 Hb_042404_010 Hb_004204_090--Hb_042404_010 Hb_003018_110 Hb_003018_110 Hb_004204_090--Hb_003018_110 Hb_004204_090--Hb_007778_020 Hb_188209_010 Hb_188209_010 Hb_004204_090--Hb_188209_010 Hb_114839_010 Hb_114839_010 Hb_004204_090--Hb_114839_010 Hb_133311_010 Hb_133311_010 Hb_004204_090--Hb_133311_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.8481 3.69262 1.07234 0.532587 0.182015 0.682464
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.32702 1.18218 0.123144 0.170267 0

CAGE analysis