Hb_000906_090

Information

Type -
Description -
Location Contig906: 147666-148142
Sequence    

Annotation

kegg
ID pop:POPTR_0016s13730g
description POPTRDRAFT_777966; hypothetical protein
nr
ID KJB17136.1
description hypothetical protein B456_002G267300 [Gossypium raimondii]
swissprot
ID P20144
description Wound-induced protein 1 OS=Solanum tuberosum GN=WUN1 PE=2 SV=1
trembl
ID A0A0D2QJP8
description Gossypium raimondii chromosome 2, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_002G267300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000906_090 0.0 - - hypothetical protein B456_002G267300 [Gossypium raimondii]
2 Hb_000130_350 0.1849085448 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
3 Hb_116701_010 0.1901092677 - - hypothetical protein POPTR_0005s19410g [Populus trichocarpa]
4 Hb_143748_010 0.1916308945 - - PREDICTED: uncharacterized protein LOC105648045 isoform X1 [Jatropha curcas]
5 Hb_019516_070 0.19181877 - - PREDICTED: uncharacterized protein LOC105634258 [Jatropha curcas]
6 Hb_001357_290 0.192796706 - - PREDICTED: uncharacterized protein LOC105632986 [Jatropha curcas]
7 Hb_002045_030 0.1966355553 transcription factor TF Family: AUX/IAA hypothetical protein CISIN_1g047687mg [Citrus sinensis]
8 Hb_006895_010 0.2066358942 - - PREDICTED: secologanin synthase-like [Citrus sinensis]
9 Hb_002081_020 0.2071677673 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]
10 Hb_000392_350 0.2074098109 - - zinc finger protein, putative [Ricinus communis]
11 Hb_000421_040 0.2084016143 - - Peptide transporter, putative [Ricinus communis]
12 Hb_000707_090 0.2102602616 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
13 Hb_000557_080 0.2117634 - - conserved hypothetical protein [Ricinus communis]
14 Hb_050160_010 0.2135839083 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
15 Hb_001366_110 0.2147175551 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002377_010 0.2147234678 transcription factor TF Family: C2C2-CO-like PREDICTED: zinc finger protein CONSTANS-LIKE 2-like [Jatropha curcas]
17 Hb_001474_060 0.2155294483 transcription factor TF Family: ARF PREDICTED: auxin response factor 16 [Jatropha curcas]
18 Hb_001289_040 0.2155956827 - - NDR1/HIN1-like 1 [Theobroma cacao]
19 Hb_094439_040 0.2167303822 - - PREDICTED: cytochrome P450 93A1-like [Citrus sinensis]
20 Hb_000130_250 0.2169490681 - - PREDICTED: protein trichome birefringence-like 31 [Jatropha curcas]

Gene co-expression network

sample Hb_000906_090 Hb_000906_090 Hb_000130_350 Hb_000130_350 Hb_000906_090--Hb_000130_350 Hb_116701_010 Hb_116701_010 Hb_000906_090--Hb_116701_010 Hb_143748_010 Hb_143748_010 Hb_000906_090--Hb_143748_010 Hb_019516_070 Hb_019516_070 Hb_000906_090--Hb_019516_070 Hb_001357_290 Hb_001357_290 Hb_000906_090--Hb_001357_290 Hb_002045_030 Hb_002045_030 Hb_000906_090--Hb_002045_030 Hb_000130_350--Hb_116701_010 Hb_158092_050 Hb_158092_050 Hb_000130_350--Hb_158092_050 Hb_031284_060 Hb_031284_060 Hb_000130_350--Hb_031284_060 Hb_000173_240 Hb_000173_240 Hb_000130_350--Hb_000173_240 Hb_008762_010 Hb_008762_010 Hb_000130_350--Hb_008762_010 Hb_000428_040 Hb_000428_040 Hb_000130_350--Hb_000428_040 Hb_116701_010--Hb_158092_050 Hb_116701_010--Hb_000428_040 Hb_116701_010--Hb_008762_010 Hb_116701_010--Hb_000173_240 Hb_001366_110 Hb_001366_110 Hb_116701_010--Hb_001366_110 Hb_004052_190 Hb_004052_190 Hb_143748_010--Hb_004052_190 Hb_143748_010--Hb_001366_110 Hb_147745_010 Hb_147745_010 Hb_143748_010--Hb_147745_010 Hb_000165_020 Hb_000165_020 Hb_143748_010--Hb_000165_020 Hb_000226_120 Hb_000226_120 Hb_143748_010--Hb_000226_120 Hb_000820_110 Hb_000820_110 Hb_019516_070--Hb_000820_110 Hb_000236_290 Hb_000236_290 Hb_019516_070--Hb_000236_290 Hb_003177_040 Hb_003177_040 Hb_019516_070--Hb_003177_040 Hb_001159_230 Hb_001159_230 Hb_019516_070--Hb_001159_230 Hb_005730_060 Hb_005730_060 Hb_019516_070--Hb_005730_060 Hb_001699_080 Hb_001699_080 Hb_019516_070--Hb_001699_080 Hb_000227_360 Hb_000227_360 Hb_001357_290--Hb_000227_360 Hb_011344_040 Hb_011344_040 Hb_001357_290--Hb_011344_040 Hb_000130_250 Hb_000130_250 Hb_001357_290--Hb_000130_250 Hb_000347_060 Hb_000347_060 Hb_001357_290--Hb_000347_060 Hb_061700_010 Hb_061700_010 Hb_001357_290--Hb_061700_010 Hb_000392_350 Hb_000392_350 Hb_001357_290--Hb_000392_350 Hb_002045_030--Hb_000392_350 Hb_006895_010 Hb_006895_010 Hb_002045_030--Hb_006895_010 Hb_094439_040 Hb_094439_040 Hb_002045_030--Hb_094439_040 Hb_001289_040 Hb_001289_040 Hb_002045_030--Hb_001289_040 Hb_000707_090 Hb_000707_090 Hb_002045_030--Hb_000707_090 Hb_000557_080 Hb_000557_080 Hb_002045_030--Hb_000557_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.538702 2.86054 0.0624171 0.124237
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.14517 0 0.191249 0 2.10865

CAGE analysis