Hb_143748_010

Information

Type -
Description -
Location Contig143748: 3909-4763
Sequence    

Annotation

kegg
ID pop:POPTR_0016s14200g
description POPTRDRAFT_577157; hypothetical protein
nr
ID XP_012089696.1
description PREDICTED: uncharacterized protein LOC105648045 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JJ08
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00365 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11548: 3967-4772
cDNA
(Sanger)
(ID:Location)		 041_H16.ab1: 3967-4457

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143748_010 0.0 - - PREDICTED: uncharacterized protein LOC105648045 isoform X1 [Jatropha curcas]
2 Hb_004052_190 0.1696126323 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
3 Hb_001366_110 0.1763393695 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000906_090 0.1916308945 - - hypothetical protein B456_002G267300 [Gossypium raimondii]
5 Hb_147745_010 0.1926905691 - - PREDICTED: uncharacterized protein LOC105639149 [Jatropha curcas]
6 Hb_000165_020 0.1945251339 - - PREDICTED: protein trichome birefringence-like 33 [Jatropha curcas]
7 Hb_000226_120 0.1964967681 - - PREDICTED: heparanase-like protein 3 isoform X1 [Jatropha curcas]
8 Hb_150486_010 0.1985176442 - - hypothetical protein CICLE_v100116733mg, partial [Citrus clementina]
9 Hb_000108_180 0.2130273332 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
10 Hb_158092_050 0.2159946989 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
11 Hb_001235_120 0.2200123876 - - hypothetical protein JCGZ_03395 [Jatropha curcas]
12 Hb_000130_350 0.2208960484 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
13 Hb_000236_230 0.222763563 - - PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]
14 Hb_166635_010 0.2231263237 - - ptm1, putative [Ricinus communis]
15 Hb_001541_060 0.2242184139 - - conserved hypothetical protein [Ricinus communis]
16 Hb_116701_010 0.2247287177 - - hypothetical protein POPTR_0005s19410g [Populus trichocarpa]
17 Hb_019516_070 0.229196694 - - PREDICTED: uncharacterized protein LOC105634258 [Jatropha curcas]
18 Hb_003177_040 0.2298491141 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
19 Hb_000251_120 0.231522362 - - O-acetyltransferase, putative [Ricinus communis]
20 Hb_005695_100 0.2352487639 - - PREDICTED: uncharacterized protein LOC105638839 [Jatropha curcas]

Gene co-expression network

sample Hb_143748_010 Hb_143748_010 Hb_004052_190 Hb_004052_190 Hb_143748_010--Hb_004052_190 Hb_001366_110 Hb_001366_110 Hb_143748_010--Hb_001366_110 Hb_000906_090 Hb_000906_090 Hb_143748_010--Hb_000906_090 Hb_147745_010 Hb_147745_010 Hb_143748_010--Hb_147745_010 Hb_000165_020 Hb_000165_020 Hb_143748_010--Hb_000165_020 Hb_000226_120 Hb_000226_120 Hb_143748_010--Hb_000226_120 Hb_000108_180 Hb_000108_180 Hb_004052_190--Hb_000108_180 Hb_008461_060 Hb_008461_060 Hb_004052_190--Hb_008461_060 Hb_002759_030 Hb_002759_030 Hb_004052_190--Hb_002759_030 Hb_001001_070 Hb_001001_070 Hb_004052_190--Hb_001001_070 Hb_000251_120 Hb_000251_120 Hb_004052_190--Hb_000251_120 Hb_003177_040 Hb_003177_040 Hb_004052_190--Hb_003177_040 Hb_158092_050 Hb_158092_050 Hb_001366_110--Hb_158092_050 Hb_000236_230 Hb_000236_230 Hb_001366_110--Hb_000236_230 Hb_116701_010 Hb_116701_010 Hb_001366_110--Hb_116701_010 Hb_000130_350 Hb_000130_350 Hb_001366_110--Hb_000130_350 Hb_001366_110--Hb_000108_180 Hb_001541_060 Hb_001541_060 Hb_001366_110--Hb_001541_060 Hb_000906_090--Hb_000130_350 Hb_000906_090--Hb_116701_010 Hb_019516_070 Hb_019516_070 Hb_000906_090--Hb_019516_070 Hb_001357_290 Hb_001357_290 Hb_000906_090--Hb_001357_290 Hb_002045_030 Hb_002045_030 Hb_000906_090--Hb_002045_030 Hb_147745_010--Hb_000165_020 Hb_147745_010--Hb_000226_120 Hb_147745_010--Hb_000236_230 Hb_150486_010 Hb_150486_010 Hb_147745_010--Hb_150486_010 Hb_147745_010--Hb_001366_110 Hb_000300_410 Hb_000300_410 Hb_147745_010--Hb_000300_410 Hb_000165_020--Hb_150486_010 Hb_000165_020--Hb_000236_230 Hb_001214_040 Hb_001214_040 Hb_000165_020--Hb_001214_040 Hb_000165_020--Hb_001366_110 Hb_000165_020--Hb_116701_010 Hb_000226_120--Hb_000236_230 Hb_017358_080 Hb_017358_080 Hb_000226_120--Hb_017358_080 Hb_000226_120--Hb_001366_110 Hb_000428_040 Hb_000428_040 Hb_000226_120--Hb_000428_040 Hb_000226_120--Hb_000165_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.106403 0.316737 2.72995 0.250364 0.0328317
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.170988 0 0.477461 0.0821799 2.11603

CAGE analysis