Hb_000497_240

Information

Type transcription factor
Description TF Family: C2H2
Location Contig497: 207409-209767
Sequence    

Annotation

kegg
ID rcu:RCOM_1438700
description nucleic acid binding protein, putative
nr
ID XP_012089417.1
description PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
swissprot
ID Q9SCQ6
description Protein indeterminate-domain 2 OS=Arabidopsis thaliana GN=IDD2 PE=2 SV=1
trembl
ID B9RG23
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1438700 PE=4 SV=1
Gene Ontology
ID GO:0003676
description nucleic acid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000497_240 0.0 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
2 Hb_007002_050 0.1983160794 - - PREDICTED: uncharacterized protein LOC105642607 [Jatropha curcas]
3 Hb_005162_120 0.2220487576 - - ferric reductase oxidase [Manihot esculenta]
4 Hb_044662_050 0.2310467608 - - hypothetical protein POPTR_0002s08440g [Populus trichocarpa]
5 Hb_002639_170 0.2391235705 - - carboxy-lyase, putative [Ricinus communis]
6 Hb_002218_100 0.2455250089 - - PREDICTED: uncharacterized protein At2g34160 [Jatropha curcas]
7 Hb_004586_310 0.2467755712 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002218_050 0.2505403749 - - SSXT family protein isoform 2, partial [Theobroma cacao]
9 Hb_188739_010 0.254589245 - - protein binding protein, putative [Ricinus communis]
10 Hb_027472_110 0.2577606446 - - Patellin-4, putative [Ricinus communis]
11 Hb_003401_010 0.2618085641 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
12 Hb_004846_230 0.2646025343 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
13 Hb_001797_030 0.2648576742 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
14 Hb_176472_020 0.2664935803 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000347_140 0.2667169585 - - PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic isoform X2 [Jatropha curcas]
16 Hb_114292_010 0.2675263649 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002221_010 0.2706277379 - - PREDICTED: adenylyl-sulfate kinase 3-like [Jatropha curcas]
18 Hb_000042_390 0.2720731624 - - PREDICTED: cyclin-dependent kinase inhibitor 7 [Jatropha curcas]
19 Hb_000668_100 0.2720841776 - - PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Jatropha curcas]
20 Hb_005211_150 0.2729636945 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38) isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000497_240 Hb_000497_240 Hb_007002_050 Hb_007002_050 Hb_000497_240--Hb_007002_050 Hb_005162_120 Hb_005162_120 Hb_000497_240--Hb_005162_120 Hb_044662_050 Hb_044662_050 Hb_000497_240--Hb_044662_050 Hb_002639_170 Hb_002639_170 Hb_000497_240--Hb_002639_170 Hb_002218_100 Hb_002218_100 Hb_000497_240--Hb_002218_100 Hb_004586_310 Hb_004586_310 Hb_000497_240--Hb_004586_310 Hb_007002_050--Hb_005162_120 Hb_002221_010 Hb_002221_010 Hb_007002_050--Hb_002221_010 Hb_002007_040 Hb_002007_040 Hb_007002_050--Hb_002007_040 Hb_003638_040 Hb_003638_040 Hb_007002_050--Hb_003638_040 Hb_000028_250 Hb_000028_250 Hb_007002_050--Hb_000028_250 Hb_011360_130 Hb_011360_130 Hb_007002_050--Hb_011360_130 Hb_000115_190 Hb_000115_190 Hb_005162_120--Hb_000115_190 Hb_005162_120--Hb_000028_250 Hb_005162_120--Hb_002639_170 Hb_002218_050 Hb_002218_050 Hb_005162_120--Hb_002218_050 Hb_001241_020 Hb_001241_020 Hb_005162_120--Hb_001241_020 Hb_000321_080 Hb_000321_080 Hb_044662_050--Hb_000321_080 Hb_044662_050--Hb_002007_040 Hb_044662_050--Hb_002221_010 Hb_004449_140 Hb_004449_140 Hb_044662_050--Hb_004449_140 Hb_000653_020 Hb_000653_020 Hb_044662_050--Hb_000653_020 Hb_002007_280 Hb_002007_280 Hb_044662_050--Hb_002007_280 Hb_011609_130 Hb_011609_130 Hb_002639_170--Hb_011609_130 Hb_000261_530 Hb_000261_530 Hb_002639_170--Hb_000261_530 Hb_010288_050 Hb_010288_050 Hb_002639_170--Hb_010288_050 Hb_002639_170--Hb_001241_020 Hb_007317_100 Hb_007317_100 Hb_002639_170--Hb_007317_100 Hb_176472_020 Hb_176472_020 Hb_002218_100--Hb_176472_020 Hb_000563_440 Hb_000563_440 Hb_002218_100--Hb_000563_440 Hb_000123_140 Hb_000123_140 Hb_002218_100--Hb_000123_140 Hb_000120_350 Hb_000120_350 Hb_002218_100--Hb_000120_350 Hb_000959_190 Hb_000959_190 Hb_002218_100--Hb_000959_190 Hb_004125_060 Hb_004125_060 Hb_002218_100--Hb_004125_060 Hb_005686_100 Hb_005686_100 Hb_004586_310--Hb_005686_100 Hb_114292_010 Hb_114292_010 Hb_004586_310--Hb_114292_010 Hb_005694_070 Hb_005694_070 Hb_004586_310--Hb_005694_070 Hb_001007_090 Hb_001007_090 Hb_004586_310--Hb_001007_090 Hb_001143_200 Hb_001143_200 Hb_004586_310--Hb_001143_200 Hb_004586_310--Hb_002221_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0670403 0.052014 0.49997 0.0554212 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0340516 0.0535763 0 0 0.0558587

CAGE analysis