Hb_000340_120

Information

Type -
Description -
Location Contig340: 130684-131429
Sequence    

Annotation

kegg
ID mdm:103406091
description uncharacterized LOC103406091
nr
ID XP_008343330.1
description PREDICTED: uncharacterized protein LOC103406091 [Malus domestica]
swissprot
ID -
description -
trembl
ID V4TII4
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10033628mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description poly protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_120 0.0 - - PREDICTED: uncharacterized protein LOC103406091 [Malus domestica]
2 Hb_004109_360 0.0636709842 - - PREDICTED: omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1-like [Jatropha curcas]
3 Hb_006494_010 0.0703678474 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
4 Hb_112255_010 0.1840464132 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
5 Hb_069338_010 0.2749293816 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001124_200 0.2860508616 - - hypothetical protein B456_011G186000 [Gossypium raimondii]
7 Hb_001519_020 0.2914972882 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
8 Hb_053272_010 0.3009914954 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
9 Hb_130470_010 0.3058995965 - - hypothetical protein, partial [Pseudomonas tolaasii]
10 Hb_003226_270 0.3059030953 - - hypothetical protein POPTR_0014s12390g [Populus trichocarpa]
11 Hb_163434_010 0.3059592293 - - hypothetical protein JCGZ_13470 [Jatropha curcas]
12 Hb_108331_010 0.3060203074 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
13 Hb_002401_020 0.3060271042 - - PREDICTED: protein argonaute 16 isoform X2 [Jatropha curcas]
14 Hb_085438_010 0.3061996166 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
15 Hb_002431_070 0.3062035714 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA11 [Jatropha curcas]
16 Hb_004730_030 0.3062151303 - - synaptonemal complex protein, putative [Ricinus communis]
17 Hb_000676_210 0.3063614999 - - Cytochrome P450 superfamily protein [Theobroma cacao]
18 Hb_003207_140 0.3063770713 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
19 Hb_004337_010 0.3065438571 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_002223_010 0.3065447758 - - hypothetical protein VITISV_009489 [Vitis vinifera]

Gene co-expression network

sample Hb_000340_120 Hb_000340_120 Hb_004109_360 Hb_004109_360 Hb_000340_120--Hb_004109_360 Hb_006494_010 Hb_006494_010 Hb_000340_120--Hb_006494_010 Hb_112255_010 Hb_112255_010 Hb_000340_120--Hb_112255_010 Hb_069338_010 Hb_069338_010 Hb_000340_120--Hb_069338_010 Hb_001124_200 Hb_001124_200 Hb_000340_120--Hb_001124_200 Hb_001519_020 Hb_001519_020 Hb_000340_120--Hb_001519_020 Hb_004109_360--Hb_006494_010 Hb_004109_360--Hb_112255_010 Hb_085438_010 Hb_085438_010 Hb_004109_360--Hb_085438_010 Hb_002431_070 Hb_002431_070 Hb_004109_360--Hb_002431_070 Hb_004730_030 Hb_004730_030 Hb_004109_360--Hb_004730_030 Hb_006494_010--Hb_112255_010 Hb_004337_010 Hb_004337_010 Hb_006494_010--Hb_004337_010 Hb_002223_010 Hb_002223_010 Hb_006494_010--Hb_002223_010 Hb_029793_020 Hb_029793_020 Hb_006494_010--Hb_029793_020 Hb_026988_030 Hb_026988_030 Hb_112255_010--Hb_026988_030 Hb_007924_040 Hb_007924_040 Hb_112255_010--Hb_007924_040 Hb_003683_100 Hb_003683_100 Hb_112255_010--Hb_003683_100 Hb_053272_010 Hb_053272_010 Hb_069338_010--Hb_053272_010 Hb_000005_140 Hb_000005_140 Hb_069338_010--Hb_000005_140 Hb_009662_070 Hb_009662_070 Hb_069338_010--Hb_009662_070 Hb_002183_080 Hb_002183_080 Hb_069338_010--Hb_002183_080 Hb_000099_140 Hb_000099_140 Hb_069338_010--Hb_000099_140 Hb_002968_050 Hb_002968_050 Hb_069338_010--Hb_002968_050 Hb_004662_020 Hb_004662_020 Hb_001124_200--Hb_004662_020 Hb_010721_040 Hb_010721_040 Hb_001124_200--Hb_010721_040 Hb_002401_020 Hb_002401_020 Hb_001124_200--Hb_002401_020 Hb_001478_030 Hb_001478_030 Hb_001124_200--Hb_001478_030 Hb_000879_220 Hb_000879_220 Hb_001124_200--Hb_000879_220 Hb_000749_280 Hb_000749_280 Hb_001124_200--Hb_000749_280 Hb_158235_010 Hb_158235_010 Hb_001519_020--Hb_158235_010 Hb_003020_290 Hb_003020_290 Hb_001519_020--Hb_003020_290 Hb_005496_100 Hb_005496_100 Hb_001519_020--Hb_005496_100 Hb_007157_010 Hb_007157_010 Hb_001519_020--Hb_007157_010 Hb_000757_090 Hb_000757_090 Hb_001519_020--Hb_000757_090 Hb_001344_030 Hb_001344_030 Hb_001519_020--Hb_001344_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.052687 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0850428 0 0 0.163316

CAGE analysis