Hb_004109_360

Information

Type -
Description -
Location Contig4109: 343551-344842
Sequence    

Annotation

kegg
ID vvi:100258789
description omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2-like
nr
ID XP_012093240.1
description PREDICTED: omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1-like [Jatropha curcas]
swissprot
ID P48631
description Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1
trembl
ID G9I194
description Fatty acid desaturase 2 OS=Jatropha curcas GN=FAD2 PE=4 SV=1
Gene Ontology
ID GO:0016717
description omega-6 fatty acid endoplasmic reticulum isozyme 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004109_360 0.0 - - PREDICTED: omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1-like [Jatropha curcas]
2 Hb_006494_010 0.0081167201 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
3 Hb_000340_120 0.0636709842 - - PREDICTED: uncharacterized protein LOC103406091 [Malus domestica]
4 Hb_112255_010 0.1391016127 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
5 Hb_085438_010 0.2536514975 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
6 Hb_002431_070 0.2536516333 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA11 [Jatropha curcas]
7 Hb_004730_030 0.2536522015 - - synaptonemal complex protein, putative [Ricinus communis]
8 Hb_000676_210 0.253677132 - - Cytochrome P450 superfamily protein [Theobroma cacao]
9 Hb_003207_140 0.2536813364 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
10 Hb_108331_010 0.2536927403 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
11 Hb_004337_010 0.2537396149 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_002223_010 0.2537399929 - - hypothetical protein VITISV_009489 [Vitis vinifera]
13 Hb_163434_010 0.2537495215 - - hypothetical protein JCGZ_13470 [Jatropha curcas]
14 Hb_029793_020 0.253750847 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_029154_020 0.2537542099 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_130470_010 0.2541529897 - - hypothetical protein, partial [Pseudomonas tolaasii]
17 Hb_003226_270 0.254180587 - - hypothetical protein POPTR_0014s12390g [Populus trichocarpa]
18 Hb_006995_030 0.256708277 - - PREDICTED: uncharacterized protein LOC102663993 [Glycine max]
19 Hb_035484_010 0.2686934243 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
20 Hb_001072_060 0.2820538119 - - PREDICTED: uncharacterized protein LOC105645525 [Jatropha curcas]

Gene co-expression network

sample Hb_004109_360 Hb_004109_360 Hb_006494_010 Hb_006494_010 Hb_004109_360--Hb_006494_010 Hb_000340_120 Hb_000340_120 Hb_004109_360--Hb_000340_120 Hb_112255_010 Hb_112255_010 Hb_004109_360--Hb_112255_010 Hb_085438_010 Hb_085438_010 Hb_004109_360--Hb_085438_010 Hb_002431_070 Hb_002431_070 Hb_004109_360--Hb_002431_070 Hb_004730_030 Hb_004730_030 Hb_004109_360--Hb_004730_030 Hb_006494_010--Hb_000340_120 Hb_006494_010--Hb_112255_010 Hb_004337_010 Hb_004337_010 Hb_006494_010--Hb_004337_010 Hb_002223_010 Hb_002223_010 Hb_006494_010--Hb_002223_010 Hb_029793_020 Hb_029793_020 Hb_006494_010--Hb_029793_020 Hb_000340_120--Hb_112255_010 Hb_069338_010 Hb_069338_010 Hb_000340_120--Hb_069338_010 Hb_001124_200 Hb_001124_200 Hb_000340_120--Hb_001124_200 Hb_001519_020 Hb_001519_020 Hb_000340_120--Hb_001519_020 Hb_026988_030 Hb_026988_030 Hb_112255_010--Hb_026988_030 Hb_007924_040 Hb_007924_040 Hb_112255_010--Hb_007924_040 Hb_003683_100 Hb_003683_100 Hb_112255_010--Hb_003683_100 Hb_085438_010--Hb_002431_070 Hb_085438_010--Hb_004730_030 Hb_000676_210 Hb_000676_210 Hb_085438_010--Hb_000676_210 Hb_003207_140 Hb_003207_140 Hb_085438_010--Hb_003207_140 Hb_108331_010 Hb_108331_010 Hb_085438_010--Hb_108331_010 Hb_085438_010--Hb_004337_010 Hb_002431_070--Hb_004730_030 Hb_002431_070--Hb_000676_210 Hb_002431_070--Hb_003207_140 Hb_002431_070--Hb_108331_010 Hb_002431_070--Hb_004337_010 Hb_004730_030--Hb_000676_210 Hb_004730_030--Hb_003207_140 Hb_004730_030--Hb_108331_010 Hb_004730_030--Hb_004337_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0149805 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0349427 0 0 0.0719963

CAGE analysis