Hb_112255_010

Information

Type -
Description -
Location Contig112255: 1266-2849
Sequence    

Annotation

kegg
ID bvg:104886862
description uncharacterized LOC104886862
nr
ID XP_012487705.1
description PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NGV1
description ATP-dependent zinc metalloprotease FtsH OS=Gossypium arboreum GN=F383_19049 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_112255_010 0.0 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
2 Hb_006494_010 0.1314066244 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
3 Hb_004109_360 0.1391016127 - - PREDICTED: omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1-like [Jatropha curcas]
4 Hb_026988_030 0.1735593018 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
5 Hb_000340_120 0.1840464132 - - PREDICTED: uncharacterized protein LOC103406091 [Malus domestica]
6 Hb_007924_040 0.2006491033 - - PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Populus euphratica]
7 Hb_003683_100 0.200659136 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_001072_060 0.2006645245 - - PREDICTED: uncharacterized protein LOC105645525 [Jatropha curcas]
9 Hb_000474_020 0.2006881845 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
10 Hb_035484_010 0.2042846355 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
11 Hb_029154_020 0.2340307062 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_029793_020 0.2340922072 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_002223_010 0.234298464 - - hypothetical protein VITISV_009489 [Vitis vinifera]
14 Hb_004337_010 0.2343058774 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_003207_140 0.2357629874 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
16 Hb_000676_210 0.2359123278 - - Cytochrome P450 superfamily protein [Theobroma cacao]
17 Hb_004730_030 0.237472993 - - synaptonemal complex protein, putative [Ricinus communis]
18 Hb_002431_070 0.237611296 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA11 [Jatropha curcas]
19 Hb_085438_010 0.2376592454 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
20 Hb_007908_010 0.2395028249 - - -

Gene co-expression network

sample Hb_112255_010 Hb_112255_010 Hb_006494_010 Hb_006494_010 Hb_112255_010--Hb_006494_010 Hb_004109_360 Hb_004109_360 Hb_112255_010--Hb_004109_360 Hb_026988_030 Hb_026988_030 Hb_112255_010--Hb_026988_030 Hb_000340_120 Hb_000340_120 Hb_112255_010--Hb_000340_120 Hb_007924_040 Hb_007924_040 Hb_112255_010--Hb_007924_040 Hb_003683_100 Hb_003683_100 Hb_112255_010--Hb_003683_100 Hb_006494_010--Hb_004109_360 Hb_006494_010--Hb_000340_120 Hb_004337_010 Hb_004337_010 Hb_006494_010--Hb_004337_010 Hb_002223_010 Hb_002223_010 Hb_006494_010--Hb_002223_010 Hb_029793_020 Hb_029793_020 Hb_006494_010--Hb_029793_020 Hb_004109_360--Hb_000340_120 Hb_085438_010 Hb_085438_010 Hb_004109_360--Hb_085438_010 Hb_002431_070 Hb_002431_070 Hb_004109_360--Hb_002431_070 Hb_004730_030 Hb_004730_030 Hb_004109_360--Hb_004730_030 Hb_072695_010 Hb_072695_010 Hb_026988_030--Hb_072695_010 Hb_151061_040 Hb_151061_040 Hb_026988_030--Hb_151061_040 Hb_000474_020 Hb_000474_020 Hb_026988_030--Hb_000474_020 Hb_026988_030--Hb_003683_100 Hb_026988_030--Hb_007924_040 Hb_069338_010 Hb_069338_010 Hb_000340_120--Hb_069338_010 Hb_001124_200 Hb_001124_200 Hb_000340_120--Hb_001124_200 Hb_001519_020 Hb_001519_020 Hb_000340_120--Hb_001519_020 Hb_007924_040--Hb_003683_100 Hb_007924_040--Hb_000474_020 Hb_001072_060 Hb_001072_060 Hb_007924_040--Hb_001072_060 Hb_035484_010 Hb_035484_010 Hb_007924_040--Hb_035484_010 Hb_029154_020 Hb_029154_020 Hb_007924_040--Hb_029154_020 Hb_007924_040--Hb_029793_020 Hb_003683_100--Hb_000474_020 Hb_003683_100--Hb_001072_060 Hb_003683_100--Hb_035484_010 Hb_003683_100--Hb_029154_020 Hb_003683_100--Hb_029793_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0101712 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0230813 0 0 0.0967879

CAGE analysis