Hb_000100_160

Information

Type -
Description -
Location Contig100: 366776-377177
Sequence    

Annotation

kegg
ID rcu:RCOM_1553230
description long-chain-fatty-acid CoA ligase, putative (EC:6.2.1.3)
nr
ID XP_002520615.1
description long-chain-fatty-acid CoA ligase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S3P6
description Long-chain-fatty-acid CoA ligase, putative OS=Ricinus communis GN=RCOM_1553230 PE=4 SV=1
Gene Ontology
ID GO:0004467
description probable acyl-activating enzyme chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00207: 376377-399749
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000100_160 0.0 - - long-chain-fatty-acid CoA ligase, putative [Ricinus communis]
2 Hb_000100_180 0.116197382 - - PREDICTED: probable acyl-activating enzyme 16, chloroplastic [Jatropha curcas]
3 Hb_004545_090 0.1377488354 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002493_020 0.1393736732 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
5 Hb_000007_450 0.1395465142 - - PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic [Jatropha curcas]
6 Hb_001329_140 0.1413540515 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
7 Hb_004224_020 0.1421255889 - - PREDICTED: uncharacterized protein LOC105643786 [Jatropha curcas]
8 Hb_000362_150 0.1428235396 - - PREDICTED: homogentisate 1,2-dioxygenase [Jatropha curcas]
9 Hb_001449_040 0.1436195993 - - PREDICTED: SWR1 complex subunit 2 isoform X2 [Jatropha curcas]
10 Hb_000174_180 0.144066258 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_006373_040 0.1442660138 - - PREDICTED: potassium transporter 11-like [Nicotiana tomentosiformis]
12 Hb_005679_050 0.1448978838 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_000236_310 0.1452477073 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Malus domestica]
14 Hb_000803_260 0.1457525598 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
15 Hb_032631_040 0.1463448762 - - PREDICTED: uncharacterized protein LOC105638769 [Jatropha curcas]
16 Hb_007441_130 0.147022868 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_011918_040 0.1471484937 - - PREDICTED: dnaJ protein homolog 2 [Jatropha curcas]
18 Hb_137222_020 0.1494553925 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
19 Hb_007805_010 0.1494764867 - - PREDICTED: ribosome biogenesis protein BMS1 homolog [Jatropha curcas]
20 Hb_187953_010 0.1495970021 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000100_160 Hb_000100_160 Hb_000100_180 Hb_000100_180 Hb_000100_160--Hb_000100_180 Hb_004545_090 Hb_004545_090 Hb_000100_160--Hb_004545_090 Hb_002493_020 Hb_002493_020 Hb_000100_160--Hb_002493_020 Hb_000007_450 Hb_000007_450 Hb_000100_160--Hb_000007_450 Hb_001329_140 Hb_001329_140 Hb_000100_160--Hb_001329_140 Hb_004224_020 Hb_004224_020 Hb_000100_160--Hb_004224_020 Hb_000544_090 Hb_000544_090 Hb_000100_180--Hb_000544_090 Hb_023480_010 Hb_023480_010 Hb_000100_180--Hb_023480_010 Hb_002022_060 Hb_002022_060 Hb_000100_180--Hb_002022_060 Hb_001049_090 Hb_001049_090 Hb_000100_180--Hb_001049_090 Hb_007441_130 Hb_007441_130 Hb_000100_180--Hb_007441_130 Hb_100215_010 Hb_100215_010 Hb_004545_090--Hb_100215_010 Hb_003010_020 Hb_003010_020 Hb_004545_090--Hb_003010_020 Hb_000990_090 Hb_000990_090 Hb_004545_090--Hb_000990_090 Hb_000023_190 Hb_000023_190 Hb_004545_090--Hb_000023_190 Hb_011918_040 Hb_011918_040 Hb_004545_090--Hb_011918_040 Hb_002909_090 Hb_002909_090 Hb_004545_090--Hb_002909_090 Hb_001496_070 Hb_001496_070 Hb_002493_020--Hb_001496_070 Hb_005679_050 Hb_005679_050 Hb_002493_020--Hb_005679_050 Hb_004102_140 Hb_004102_140 Hb_002493_020--Hb_004102_140 Hb_004228_010 Hb_004228_010 Hb_002493_020--Hb_004228_010 Hb_172632_080 Hb_172632_080 Hb_002493_020--Hb_172632_080 Hb_004306_080 Hb_004306_080 Hb_002493_020--Hb_004306_080 Hb_000803_260 Hb_000803_260 Hb_000007_450--Hb_000803_260 Hb_004143_130 Hb_004143_130 Hb_000007_450--Hb_004143_130 Hb_000388_090 Hb_000388_090 Hb_000007_450--Hb_000388_090 Hb_001862_180 Hb_001862_180 Hb_000007_450--Hb_001862_180 Hb_000007_450--Hb_001329_140 Hb_000590_050 Hb_000590_050 Hb_000007_450--Hb_000590_050 Hb_000684_250 Hb_000684_250 Hb_001329_140--Hb_000684_250 Hb_003168_110 Hb_003168_110 Hb_001329_140--Hb_003168_110 Hb_001329_140--Hb_000803_260 Hb_000037_190 Hb_000037_190 Hb_001329_140--Hb_000037_190 Hb_000457_260 Hb_000457_260 Hb_001329_140--Hb_000457_260 Hb_001329_140--Hb_000590_050 Hb_187953_010 Hb_187953_010 Hb_004224_020--Hb_187953_010 Hb_000470_080 Hb_000470_080 Hb_004224_020--Hb_000470_080 Hb_028912_040 Hb_028912_040 Hb_004224_020--Hb_028912_040 Hb_010427_010 Hb_010427_010 Hb_004224_020--Hb_010427_010 Hb_000236_310 Hb_000236_310 Hb_004224_020--Hb_000236_310 Hb_006660_010 Hb_006660_010 Hb_004224_020--Hb_006660_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.63485 4.14649 3.85718 5.42128 2.38926 12.6866
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.04069 1.94089 5.68989 5.70017 9.52648

CAGE analysis