Hb_000007_450

Information

Type -
Description -
Location Contig7: 422520-432561
Sequence    

Annotation

kegg
ID rcu:RCOM_1464010
description hypothetical protein
nr
ID XP_012081995.1
description PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic [Jatropha curcas]
swissprot
ID Q9S7I0
description tRNA(adenine(34)) deaminase, chloroplastic OS=Arabidopsis thaliana GN=TADA PE=1 SV=1
trembl
ID A0A067K2S7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18254 PE=3 SV=1
Gene Ontology
ID GO:0016787
description trna(adenine ) chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54777: 423518-424037 , PASA_asmbl_54778: 424103-429903
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000007_450 0.0 - - PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic [Jatropha curcas]
2 Hb_000803_260 0.0871646748 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
3 Hb_004143_130 0.0901618157 - - PREDICTED: BEACH domain-containing protein lvsC [Jatropha curcas]
4 Hb_000388_090 0.090379792 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
5 Hb_001862_180 0.0927332339 - - PREDICTED: pentatricopeptide repeat-containing protein ELI1, chloroplastic [Jatropha curcas]
6 Hb_001329_140 0.098474354 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
7 Hb_000590_050 0.0986893753 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
8 Hb_009486_200 0.0992703229 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
9 Hb_003168_110 0.0997507144 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Jatropha curcas]
10 Hb_005901_020 0.101356901 - - PREDICTED: elongation factor Tu GTP-binding domain-containing protein 1 [Jatropha curcas]
11 Hb_000684_250 0.1023854048 - - PREDICTED: uncharacterized protein LOC105642172 [Jatropha curcas]
12 Hb_013399_070 0.1024410372 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
13 Hb_001004_060 0.1031711978 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
14 Hb_000174_180 0.1036156985 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000028_390 0.1045224773 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
16 Hb_004676_010 0.105706028 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Jatropha curcas]
17 Hb_010174_110 0.1071221411 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
18 Hb_009767_080 0.107403665 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
19 Hb_001227_080 0.1082429483 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_004449_080 0.1091139897 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000007_450 Hb_000007_450 Hb_000803_260 Hb_000803_260 Hb_000007_450--Hb_000803_260 Hb_004143_130 Hb_004143_130 Hb_000007_450--Hb_004143_130 Hb_000388_090 Hb_000388_090 Hb_000007_450--Hb_000388_090 Hb_001862_180 Hb_001862_180 Hb_000007_450--Hb_001862_180 Hb_001329_140 Hb_001329_140 Hb_000007_450--Hb_001329_140 Hb_000590_050 Hb_000590_050 Hb_000007_450--Hb_000590_050 Hb_000803_260--Hb_001329_140 Hb_000318_390 Hb_000318_390 Hb_000803_260--Hb_000318_390 Hb_000803_260--Hb_001862_180 Hb_000684_250 Hb_000684_250 Hb_000803_260--Hb_000684_250 Hb_001472_090 Hb_001472_090 Hb_000803_260--Hb_001472_090 Hb_005901_020 Hb_005901_020 Hb_000803_260--Hb_005901_020 Hb_000028_280 Hb_000028_280 Hb_004143_130--Hb_000028_280 Hb_002942_100 Hb_002942_100 Hb_004143_130--Hb_002942_100 Hb_003253_040 Hb_003253_040 Hb_004143_130--Hb_003253_040 Hb_010174_110 Hb_010174_110 Hb_004143_130--Hb_010174_110 Hb_002740_110 Hb_002740_110 Hb_004143_130--Hb_002740_110 Hb_004032_380 Hb_004032_380 Hb_004143_130--Hb_004032_380 Hb_001357_020 Hb_001357_020 Hb_000388_090--Hb_001357_020 Hb_005736_020 Hb_005736_020 Hb_000388_090--Hb_005736_020 Hb_002063_020 Hb_002063_020 Hb_000388_090--Hb_002063_020 Hb_028912_050 Hb_028912_050 Hb_000388_090--Hb_028912_050 Hb_002099_080 Hb_002099_080 Hb_000388_090--Hb_002099_080 Hb_000028_390 Hb_000028_390 Hb_000388_090--Hb_000028_390 Hb_003203_030 Hb_003203_030 Hb_001862_180--Hb_003203_030 Hb_001205_230 Hb_001205_230 Hb_001862_180--Hb_001205_230 Hb_003910_060 Hb_003910_060 Hb_001862_180--Hb_003910_060 Hb_001862_180--Hb_000388_090 Hb_001862_180--Hb_001329_140 Hb_001329_140--Hb_000684_250 Hb_003168_110 Hb_003168_110 Hb_001329_140--Hb_003168_110 Hb_000037_190 Hb_000037_190 Hb_001329_140--Hb_000037_190 Hb_000457_260 Hb_000457_260 Hb_001329_140--Hb_000457_260 Hb_001329_140--Hb_000590_050 Hb_000327_270 Hb_000327_270 Hb_000590_050--Hb_000327_270 Hb_020378_030 Hb_020378_030 Hb_000590_050--Hb_020378_030 Hb_000890_060 Hb_000890_060 Hb_000590_050--Hb_000890_060 Hb_009270_020 Hb_009270_020 Hb_000590_050--Hb_009270_020 Hb_000592_030 Hb_000592_030 Hb_000590_050--Hb_000592_030 Hb_001004_060 Hb_001004_060 Hb_000590_050--Hb_001004_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.40932 11.4797 4.48251 5.31278 4.79008 13.5046
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.72515 4.75076 10.8451 11.0219 12.0765

CAGE analysis