Hb_000042_210

Information

Type -
Description -
Location Contig42: 179801-181746
Sequence    

Annotation

kegg
ID mdm:103430121
description uncharacterized LOC103430121
nr
ID XP_012070649.1
description PREDICTED: uncharacterized protein LOC105632808 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L4B1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00696 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41468: 180296-181701
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000042_210 0.0 - - PREDICTED: uncharacterized protein LOC105632808 [Jatropha curcas]
2 Hb_001352_090 0.1014411751 - - PREDICTED: UPF0161 protein At3g09310 [Jatropha curcas]
3 Hb_000281_100 0.1041188768 - - PREDICTED: putative RNA methyltransferase At5g10620 [Jatropha curcas]
4 Hb_000923_040 0.1051492423 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
5 Hb_008887_050 0.1061874015 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
6 Hb_003126_040 0.107834546 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006623_020 0.1098727014 - - PREDICTED: protein LURP-one-related 7 isoform X1 [Jatropha curcas]
8 Hb_000933_150 0.1102439597 - - PREDICTED: mitotic checkpoint protein BUB3.3 isoform X1 [Jatropha curcas]
9 Hb_001754_240 0.1102776859 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
10 Hb_004241_070 0.1111936227 - - PREDICTED: WD repeat-containing protein 25 [Jatropha curcas]
11 Hb_004525_100 0.1126209143 - - hypothetical protein JCGZ_18418 [Jatropha curcas]
12 Hb_000205_120 0.1145170483 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
13 Hb_000920_280 0.1180282551 - - Protein SENSITIVITY TO RED LIGHT REDUCED, putative [Ricinus communis]
14 Hb_002687_140 0.1200442241 - - hypothetical protein JCGZ_24463 [Jatropha curcas]
15 Hb_000676_050 0.1219878927 - - PREDICTED: thioredoxin domain-containing protein PLP3B-like [Gossypium raimondii]
16 Hb_000307_170 0.1220365058 - - PREDICTED: uncharacterized protein LOC105638528 [Jatropha curcas]
17 Hb_000088_200 0.1223323435 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
18 Hb_000236_280 0.1225406585 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
19 Hb_143629_010 0.1237319019 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
20 Hb_000141_060 0.1237605067 - - PREDICTED: uncharacterized protein LOC105632248 [Jatropha curcas]

Gene co-expression network

sample Hb_000042_210 Hb_000042_210 Hb_001352_090 Hb_001352_090 Hb_000042_210--Hb_001352_090 Hb_000281_100 Hb_000281_100 Hb_000042_210--Hb_000281_100 Hb_000923_040 Hb_000923_040 Hb_000042_210--Hb_000923_040 Hb_008887_050 Hb_008887_050 Hb_000042_210--Hb_008887_050 Hb_003126_040 Hb_003126_040 Hb_000042_210--Hb_003126_040 Hb_006623_020 Hb_006623_020 Hb_000042_210--Hb_006623_020 Hb_002687_140 Hb_002687_140 Hb_001352_090--Hb_002687_140 Hb_001348_070 Hb_001348_070 Hb_001352_090--Hb_001348_070 Hb_003142_070 Hb_003142_070 Hb_001352_090--Hb_003142_070 Hb_001352_090--Hb_006623_020 Hb_000808_250 Hb_000808_250 Hb_001352_090--Hb_000808_250 Hb_000014_170 Hb_000014_170 Hb_001352_090--Hb_000014_170 Hb_000088_200 Hb_000088_200 Hb_000281_100--Hb_000088_200 Hb_003006_060 Hb_003006_060 Hb_000281_100--Hb_003006_060 Hb_171900_100 Hb_171900_100 Hb_000281_100--Hb_171900_100 Hb_004195_280 Hb_004195_280 Hb_000281_100--Hb_004195_280 Hb_004993_010 Hb_004993_010 Hb_000281_100--Hb_004993_010 Hb_000104_080 Hb_000104_080 Hb_000923_040--Hb_000104_080 Hb_000923_040--Hb_008887_050 Hb_000345_530 Hb_000345_530 Hb_000923_040--Hb_000345_530 Hb_001584_290 Hb_001584_290 Hb_000923_040--Hb_001584_290 Hb_023001_020 Hb_023001_020 Hb_000923_040--Hb_023001_020 Hb_001040_040 Hb_001040_040 Hb_000923_040--Hb_001040_040 Hb_143629_010 Hb_143629_010 Hb_008887_050--Hb_143629_010 Hb_031939_010 Hb_031939_010 Hb_008887_050--Hb_031939_010 Hb_005503_030 Hb_005503_030 Hb_008887_050--Hb_005503_030 Hb_000290_020 Hb_000290_020 Hb_008887_050--Hb_000290_020 Hb_002007_350 Hb_002007_350 Hb_008887_050--Hb_002007_350 Hb_003126_040--Hb_000290_020 Hb_012675_090 Hb_012675_090 Hb_003126_040--Hb_012675_090 Hb_004525_100 Hb_004525_100 Hb_003126_040--Hb_004525_100 Hb_004044_020 Hb_004044_020 Hb_003126_040--Hb_004044_020 Hb_003086_070 Hb_003086_070 Hb_003126_040--Hb_003086_070 Hb_003126_040--Hb_000088_200 Hb_006623_020--Hb_000808_250 Hb_021422_010 Hb_021422_010 Hb_006623_020--Hb_021422_010 Hb_000617_220 Hb_000617_220 Hb_006623_020--Hb_000617_220 Hb_003018_060 Hb_003018_060 Hb_006623_020--Hb_003018_060 Hb_000920_280 Hb_000920_280 Hb_006623_020--Hb_000920_280 Hb_003091_010 Hb_003091_010 Hb_006623_020--Hb_003091_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
120.65 18.6022 60.1975 13.6636 137.147 69.8564
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.4085 56.7004 36.2986 18.6618 21.687

CAGE analysis