Hb_000016_150

Information

Type -
Description -
Location Contig16: 186154-186492
Sequence    

Annotation

kegg
ID pop:POPTR_0015s13730g
description POPTRDRAFT_575761; peptidoglycan-binding LysM domain-containing family protein
nr
ID XP_011041736.1
description PREDICTED: uncharacterized protein LOC105137629 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9ID24
description Peptidoglycan-binding LysM domain-containing family protein (Fragment) OS=Populus trichocarpa GN=POPTR_0015s13730g PE=4 SV=2
Gene Ontology
ID GO:0009627
description peptidoglycan-binding domain-containing family partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000016_150 0.0 - - PREDICTED: uncharacterized protein LOC105137629 [Populus euphratica]
2 Hb_000692_230 0.1664182812 - - phospholipase d delta, putative [Ricinus communis]
3 Hb_000497_170 0.1770727077 - - PREDICTED: uncharacterized protein LOC105647275 [Jatropha curcas]
4 Hb_000369_050 0.1933751188 - - Ankyrin repeat family protein, putative [Theobroma cacao]
5 Hb_000638_180 0.1979709413 - - PREDICTED: uncharacterized protein LOC105124685 [Populus euphratica]
6 Hb_007027_010 0.1995872397 - - RING-H2 finger protein ATL2J, putative [Ricinus communis]
7 Hb_186495_010 0.2014281506 - - Phosphoprotein phosphatase [Theobroma cacao]
8 Hb_000056_350 0.2023601172 - - PREDICTED: uncharacterized protein LOC105630437 [Jatropha curcas]
9 Hb_002571_070 0.2026871991 - - PREDICTED: cation/calcium exchanger 2 [Jatropha curcas]
10 Hb_002027_170 0.202846111 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Jatropha curcas]
11 Hb_007163_040 0.2054786773 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
12 Hb_005054_170 0.2112821301 transcription factor TF Family: MYB DNA binding protein, putative [Ricinus communis]
13 Hb_001016_040 0.2113619649 transcription factor TF Family: Orphans PREDICTED: histidine kinase 1 isoform X1 [Jatropha curcas]
14 Hb_002973_030 0.2125407237 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
15 Hb_103149_010 0.2163313472 - - hypothetical protein CISIN_1g0397312mg, partial [Citrus sinensis]
16 Hb_001318_230 0.2166593684 - - Boron transporter, putative [Ricinus communis]
17 Hb_000733_090 0.2173998596 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
18 Hb_001329_270 0.2197883848 - - PREDICTED: two-pore potassium channel 5 [Jatropha curcas]
19 Hb_000028_580 0.2198848761 - - PREDICTED: glutamate decarboxylase 5-like [Jatropha curcas]
20 Hb_000479_060 0.2200591227 - - PREDICTED: UDP-glucose 6-dehydrogenase 1 [Vitis vinifera]

Gene co-expression network

sample Hb_000016_150 Hb_000016_150 Hb_000692_230 Hb_000692_230 Hb_000016_150--Hb_000692_230 Hb_000497_170 Hb_000497_170 Hb_000016_150--Hb_000497_170 Hb_000369_050 Hb_000369_050 Hb_000016_150--Hb_000369_050 Hb_000638_180 Hb_000638_180 Hb_000016_150--Hb_000638_180 Hb_007027_010 Hb_007027_010 Hb_000016_150--Hb_007027_010 Hb_186495_010 Hb_186495_010 Hb_000016_150--Hb_186495_010 Hb_004282_040 Hb_004282_040 Hb_000692_230--Hb_004282_040 Hb_000692_230--Hb_000638_180 Hb_009476_160 Hb_009476_160 Hb_000692_230--Hb_009476_160 Hb_002324_040 Hb_002324_040 Hb_000692_230--Hb_002324_040 Hb_103149_010 Hb_103149_010 Hb_000692_230--Hb_103149_010 Hb_002973_030 Hb_002973_030 Hb_000692_230--Hb_002973_030 Hb_103541_010 Hb_103541_010 Hb_000497_170--Hb_103541_010 Hb_001587_220 Hb_001587_220 Hb_000497_170--Hb_001587_220 Hb_000090_020 Hb_000090_020 Hb_000497_170--Hb_000090_020 Hb_000497_170--Hb_000638_180 Hb_012553_030 Hb_012553_030 Hb_000497_170--Hb_012553_030 Hb_000732_100 Hb_000732_100 Hb_000497_170--Hb_000732_100 Hb_005687_060 Hb_005687_060 Hb_000369_050--Hb_005687_060 Hb_001481_110 Hb_001481_110 Hb_000369_050--Hb_001481_110 Hb_000369_050--Hb_103149_010 Hb_001610_050 Hb_001610_050 Hb_000369_050--Hb_001610_050 Hb_000702_040 Hb_000702_040 Hb_000369_050--Hb_000702_040 Hb_005892_010 Hb_005892_010 Hb_000369_050--Hb_005892_010 Hb_000638_180--Hb_000732_100 Hb_114733_010 Hb_114733_010 Hb_000638_180--Hb_114733_010 Hb_007292_050 Hb_007292_050 Hb_000638_180--Hb_007292_050 Hb_004241_200 Hb_004241_200 Hb_000638_180--Hb_004241_200 Hb_097634_010 Hb_097634_010 Hb_000638_180--Hb_097634_010 Hb_000742_260 Hb_000742_260 Hb_000638_180--Hb_000742_260 Hb_000979_160 Hb_000979_160 Hb_007027_010--Hb_000979_160 Hb_004462_030 Hb_004462_030 Hb_007027_010--Hb_004462_030 Hb_001728_130 Hb_001728_130 Hb_007027_010--Hb_001728_130 Hb_073808_010 Hb_073808_010 Hb_007027_010--Hb_073808_010 Hb_000959_120 Hb_000959_120 Hb_007027_010--Hb_000959_120 Hb_000540_040 Hb_000540_040 Hb_007027_010--Hb_000540_040 Hb_072153_010 Hb_072153_010 Hb_186495_010--Hb_072153_010 Hb_001016_040 Hb_001016_040 Hb_186495_010--Hb_001016_040 Hb_000069_630 Hb_000069_630 Hb_186495_010--Hb_000069_630 Hb_034688_030 Hb_034688_030 Hb_186495_010--Hb_034688_030 Hb_005056_120 Hb_005056_120 Hb_186495_010--Hb_005056_120 Hb_000367_320 Hb_000367_320 Hb_186495_010--Hb_000367_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.940898 81.0555 4.63532 123.825 0.341978 1.40905
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.76562 9.47618 8.63292 21.7461 30.0987

CAGE analysis