Hb_148422_010

Information

Type -
Description -
Location Contig148422: 49-3059
Sequence    

Annotation

kegg
ID bvg:104908874
description uncharacterized LOC104908874
nr
ID XP_010696343.1
description PREDICTED: uncharacterized protein LOC104908874, partial [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID A5BA20
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038948 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_148422_010 0.0 - - PREDICTED: uncharacterized protein LOC104908874, partial [Beta vulgaris subsp. vulgaris]
2 Hb_183612_090 0.2077840948 - - -
3 Hb_012586_020 0.2077898777 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
4 Hb_003060_040 0.2294401717 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]
5 Hb_004942_020 0.2311764374 - - Potassium transporter, putative [Ricinus communis]
6 Hb_001425_060 0.2335961064 - - conserved hypothetical protein [Ricinus communis]
7 Hb_091433_030 0.2336959007 - - -
8 Hb_000078_020 0.2384655396 - - -
9 Hb_001425_070 0.2407082833 - - -
10 Hb_000316_100 0.2425189345 - - protein with unknown function [Ricinus communis]
11 Hb_058143_010 0.2472202348 - - hypothetical protein JCGZ_01992 [Jatropha curcas]
12 Hb_089100_050 0.2486216151 - - -
13 Hb_006351_110 0.2519654904 - - -
14 Hb_003060_030 0.2534797115 - - conserved hypothetical protein 16 [Hevea brasiliensis]
15 Hb_004159_050 0.2543504775 - - conserved hypothetical protein [Ricinus communis]
16 Hb_010589_050 0.2580625782 - - -
17 Hb_027892_040 0.2581772014 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
18 Hb_000103_550 0.2584980265 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
19 Hb_001143_070 0.2592393083 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
20 Hb_004942_010 0.2602953024 - - hypothetical protein AMTR_s00057p00201180 [Amborella trichopoda]

Gene co-expression network

sample Hb_148422_010 Hb_148422_010 Hb_183612_090 Hb_183612_090 Hb_148422_010--Hb_183612_090 Hb_012586_020 Hb_012586_020 Hb_148422_010--Hb_012586_020 Hb_003060_040 Hb_003060_040 Hb_148422_010--Hb_003060_040 Hb_004942_020 Hb_004942_020 Hb_148422_010--Hb_004942_020 Hb_001425_060 Hb_001425_060 Hb_148422_010--Hb_001425_060 Hb_091433_030 Hb_091433_030 Hb_148422_010--Hb_091433_030 Hb_001085_180 Hb_001085_180 Hb_183612_090--Hb_001085_180 Hb_012305_020 Hb_012305_020 Hb_183612_090--Hb_012305_020 Hb_183612_090--Hb_003060_040 Hb_061383_010 Hb_061383_010 Hb_183612_090--Hb_061383_010 Hb_003913_050 Hb_003913_050 Hb_183612_090--Hb_003913_050 Hb_183612_090--Hb_091433_030 Hb_012586_020--Hb_004942_020 Hb_010589_050 Hb_010589_050 Hb_012586_020--Hb_010589_050 Hb_039946_010 Hb_039946_010 Hb_012586_020--Hb_039946_010 Hb_058143_010 Hb_058143_010 Hb_012586_020--Hb_058143_010 Hb_002290_050 Hb_002290_050 Hb_012586_020--Hb_002290_050 Hb_000352_180 Hb_000352_180 Hb_012586_020--Hb_000352_180 Hb_000920_320 Hb_000920_320 Hb_003060_040--Hb_000920_320 Hb_003060_040--Hb_091433_030 Hb_000270_620 Hb_000270_620 Hb_003060_040--Hb_000270_620 Hb_001433_100 Hb_001433_100 Hb_003060_040--Hb_001433_100 Hb_003226_240 Hb_003226_240 Hb_003060_040--Hb_003226_240 Hb_003060_040--Hb_003913_050 Hb_004942_020--Hb_058143_010 Hb_113906_010 Hb_113906_010 Hb_004942_020--Hb_113906_010 Hb_002478_020 Hb_002478_020 Hb_004942_020--Hb_002478_020 Hb_004942_020--Hb_000352_180 Hb_001143_070 Hb_001143_070 Hb_004942_020--Hb_001143_070 Hb_001425_060--Hb_091433_030 Hb_001425_070 Hb_001425_070 Hb_001425_060--Hb_001425_070 Hb_001425_050 Hb_001425_050 Hb_001425_060--Hb_001425_050 Hb_000103_030 Hb_000103_030 Hb_001425_060--Hb_000103_030 Hb_004461_020 Hb_004461_020 Hb_001425_060--Hb_004461_020 Hb_001425_060--Hb_003060_040 Hb_091433_030--Hb_001425_070 Hb_002989_040 Hb_002989_040 Hb_091433_030--Hb_002989_040 Hb_023051_020 Hb_023051_020 Hb_091433_030--Hb_023051_020 Hb_091433_030--Hb_000103_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.00732744 0.00736524
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0177687 0.0699098 0.0266519 0 0

CAGE analysis