Hb_137222_020

Information

Type -
Description -
Location Contig137222: 23506-25318
Sequence    

Annotation

kegg
ID pop:POPTR_0004s07290g
description hypothetical protein
nr
ID XP_012079624.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
swissprot
ID P0C7Q7
description Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1
trembl
ID U5GKJ9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s07290g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10276: 23416-27783 , PASA_asmbl_10278: 23749-23936
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_137222_020 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
2 Hb_000212_190 0.1013171581 - - PREDICTED: phospholipase A(1) LCAT3 isoform X1 [Jatropha curcas]
3 Hb_000103_480 0.1040008092 - - -
4 Hb_000200_030 0.1188438467 - - PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]
5 Hb_004398_030 0.11906865 - - PREDICTED: chloroplast processing peptidase [Jatropha curcas]
6 Hb_021409_180 0.1223690592 - - PREDICTED: glutamine-dependent NAD(+) synthetase [Jatropha curcas]
7 Hb_000103_530 0.1251258508 - - PREDICTED: uncharacterized protein LOC105632061 [Jatropha curcas]
8 Hb_001472_060 0.1253433534 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform X1 [Jatropha curcas]
9 Hb_001700_010 0.131414216 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
10 Hb_001205_120 0.1332592125 - - PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Populus euphratica]
11 Hb_000027_190 0.1352590538 - - PREDICTED: uncharacterized protein LOC105642057 isoform X1 [Jatropha curcas]
12 Hb_001322_140 0.13746644 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic [Jatropha curcas]
13 Hb_001975_090 0.1381606541 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
14 Hb_008165_060 0.1403546576 - - PREDICTED: uncharacterized protein LOC105635541 [Jatropha curcas]
15 Hb_000062_370 0.1410845823 - - beta-ketoacyl-ACP reductase [Vernicia fordii]
16 Hb_001341_070 0.1414385094 - - PREDICTED: uncharacterized protein LOC105628138 isoform X1 [Jatropha curcas]
17 Hb_000100_180 0.1428230244 - - PREDICTED: probable acyl-activating enzyme 16, chloroplastic [Jatropha curcas]
18 Hb_004097_130 0.143754172 - - Inositol-tetrakisphosphate 1-kinase, putative [Ricinus communis]
19 Hb_003952_060 0.144441303 - - hypothetical protein POPTR_0016s11000g [Populus trichocarpa]
20 Hb_188063_020 0.1472620995 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_137222_020 Hb_137222_020 Hb_000212_190 Hb_000212_190 Hb_137222_020--Hb_000212_190 Hb_000103_480 Hb_000103_480 Hb_137222_020--Hb_000103_480 Hb_000200_030 Hb_000200_030 Hb_137222_020--Hb_000200_030 Hb_004398_030 Hb_004398_030 Hb_137222_020--Hb_004398_030 Hb_021409_180 Hb_021409_180 Hb_137222_020--Hb_021409_180 Hb_000103_530 Hb_000103_530 Hb_137222_020--Hb_000103_530 Hb_004097_130 Hb_004097_130 Hb_000212_190--Hb_004097_130 Hb_001472_060 Hb_001472_060 Hb_000212_190--Hb_001472_060 Hb_012539_060 Hb_012539_060 Hb_000212_190--Hb_012539_060 Hb_000039_150 Hb_000039_150 Hb_000212_190--Hb_000039_150 Hb_002055_040 Hb_002055_040 Hb_000212_190--Hb_002055_040 Hb_001700_010 Hb_001700_010 Hb_000103_480--Hb_001700_010 Hb_000103_480--Hb_001472_060 Hb_000103_480--Hb_004097_130 Hb_000103_480--Hb_000103_530 Hb_008165_060 Hb_008165_060 Hb_000103_480--Hb_008165_060 Hb_001322_140 Hb_001322_140 Hb_000103_480--Hb_001322_140 Hb_002374_240 Hb_002374_240 Hb_000200_030--Hb_002374_240 Hb_000224_160 Hb_000224_160 Hb_000200_030--Hb_000224_160 Hb_000184_170 Hb_000184_170 Hb_000200_030--Hb_000184_170 Hb_004994_380 Hb_004994_380 Hb_000200_030--Hb_004994_380 Hb_000915_260 Hb_000915_260 Hb_000200_030--Hb_000915_260 Hb_022693_140 Hb_022693_140 Hb_000200_030--Hb_022693_140 Hb_001975_090 Hb_001975_090 Hb_004398_030--Hb_001975_090 Hb_007803_030 Hb_007803_030 Hb_004398_030--Hb_007803_030 Hb_006816_180 Hb_006816_180 Hb_004398_030--Hb_006816_180 Hb_000135_030 Hb_000135_030 Hb_004398_030--Hb_000135_030 Hb_000181_240 Hb_000181_240 Hb_004398_030--Hb_000181_240 Hb_000627_250 Hb_000627_250 Hb_004398_030--Hb_000627_250 Hb_000599_180 Hb_000599_180 Hb_021409_180--Hb_000599_180 Hb_001205_120 Hb_001205_120 Hb_021409_180--Hb_001205_120 Hb_021409_180--Hb_001472_060 Hb_023344_120 Hb_023344_120 Hb_021409_180--Hb_023344_120 Hb_032986_010 Hb_032986_010 Hb_021409_180--Hb_032986_010 Hb_000808_050 Hb_000808_050 Hb_021409_180--Hb_000808_050 Hb_007002_020 Hb_007002_020 Hb_000103_530--Hb_007002_020 Hb_000103_530--Hb_001700_010 Hb_000103_530--Hb_004097_130 Hb_012305_100 Hb_012305_100 Hb_000103_530--Hb_012305_100 Hb_004583_010 Hb_004583_010 Hb_000103_530--Hb_004583_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.18248 0.320518 1.07754 0.579688 0.457848 1.1733
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.814578 0.320397 1.3053 0.71078 1.39212

CAGE analysis