Hb_133151_010

Information

Type -
Description -
Location Contig133151: 2201-2515
Sequence    

Annotation

kegg
ID pop:POPTR_0001s26900g
description POPTRDRAFT_549273; NBS-LRR resistance gene-like protein ARGH30
nr
ID XP_002299922.2
description NBS-LRR resistance gene-like protein ARGH30 [Populus trichocarpa]
swissprot
ID Q9LRR5
description Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1
trembl
ID B9GF31
description NBS-LRR resistance gene-like protein ARGH30 OS=Populus trichocarpa GN=POPTR_0001s26900g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_133151_010 0.0 - - NBS-LRR resistance gene-like protein ARGH30 [Populus trichocarpa]
2 Hb_003881_020 0.1363620451 - - PREDICTED: stellacyanin-like [Jatropha curcas]
3 Hb_083412_010 0.1553748752 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
4 Hb_000289_100 0.1569501315 - - carbonyl reductase, putative [Ricinus communis]
5 Hb_005679_110 0.1583227083 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
6 Hb_137272_010 0.1613883755 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
7 Hb_000501_110 0.1617404542 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 [Populus euphratica]
8 Hb_006681_030 0.1654695491 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Populus euphratica]
9 Hb_000010_150 0.1656578684 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Jatropha curcas]
10 Hb_002984_040 0.165735046 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_033312_050 0.169008665 - - PREDICTED: uncharacterized protein LOC105638598, partial [Jatropha curcas]
12 Hb_022092_050 0.1708012221 - - PREDICTED: uncharacterized protein LOC105136214 [Populus euphratica]
13 Hb_000096_210 0.1721245203 - - PREDICTED: probable carboxylesterase 7 [Jatropha curcas]
14 Hb_000760_080 0.1728091765 - - mutt domain protein, putative [Ricinus communis]
15 Hb_039022_020 0.173399681 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
16 Hb_002503_050 0.1736922018 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
17 Hb_021346_020 0.1754569728 - - hypothetical protein JCGZ_26746 [Jatropha curcas]
18 Hb_003224_010 0.1755670703 - - -
19 Hb_014250_010 0.1758090088 - - PREDICTED: alpha-mannosidase-like isoform X2 [Populus euphratica]
20 Hb_000567_060 0.175912235 - - PREDICTED: U-box domain-containing protein 7 [Jatropha curcas]

Gene co-expression network

sample Hb_133151_010 Hb_133151_010 Hb_003881_020 Hb_003881_020 Hb_133151_010--Hb_003881_020 Hb_083412_010 Hb_083412_010 Hb_133151_010--Hb_083412_010 Hb_000289_100 Hb_000289_100 Hb_133151_010--Hb_000289_100 Hb_005679_110 Hb_005679_110 Hb_133151_010--Hb_005679_110 Hb_137272_010 Hb_137272_010 Hb_133151_010--Hb_137272_010 Hb_000501_110 Hb_000501_110 Hb_133151_010--Hb_000501_110 Hb_003881_020--Hb_137272_010 Hb_003881_020--Hb_083412_010 Hb_000567_060 Hb_000567_060 Hb_003881_020--Hb_000567_060 Hb_000482_070 Hb_000482_070 Hb_003881_020--Hb_000482_070 Hb_003881_020--Hb_000501_110 Hb_002984_040 Hb_002984_040 Hb_003881_020--Hb_002984_040 Hb_039022_020 Hb_039022_020 Hb_083412_010--Hb_039022_020 Hb_000096_210 Hb_000096_210 Hb_083412_010--Hb_000096_210 Hb_083412_010--Hb_000501_110 Hb_014250_010 Hb_014250_010 Hb_083412_010--Hb_014250_010 Hb_083412_010--Hb_137272_010 Hb_000108_090 Hb_000108_090 Hb_000289_100--Hb_000108_090 Hb_001634_080 Hb_001634_080 Hb_000289_100--Hb_001634_080 Hb_006788_100 Hb_006788_100 Hb_000289_100--Hb_006788_100 Hb_005542_040 Hb_005542_040 Hb_000289_100--Hb_005542_040 Hb_094148_010 Hb_094148_010 Hb_000289_100--Hb_094148_010 Hb_107809_010 Hb_107809_010 Hb_000289_100--Hb_107809_010 Hb_002871_050 Hb_002871_050 Hb_005679_110--Hb_002871_050 Hb_001349_020 Hb_001349_020 Hb_005679_110--Hb_001349_020 Hb_000696_030 Hb_000696_030 Hb_005679_110--Hb_000696_030 Hb_001776_070 Hb_001776_070 Hb_005679_110--Hb_001776_070 Hb_005679_110--Hb_000482_070 Hb_001345_020 Hb_001345_020 Hb_005679_110--Hb_001345_020 Hb_137272_010--Hb_000567_060 Hb_000018_090 Hb_000018_090 Hb_137272_010--Hb_000018_090 Hb_006266_010 Hb_006266_010 Hb_137272_010--Hb_006266_010 Hb_137272_010--Hb_000482_070 Hb_000189_160 Hb_000189_160 Hb_137272_010--Hb_000189_160 Hb_000501_110--Hb_002984_040 Hb_007676_040 Hb_007676_040 Hb_000501_110--Hb_007676_040 Hb_000501_110--Hb_005542_040 Hb_000501_110--Hb_039022_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.139291 0.512817 1.1187 0.448071 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.960713 0.414522

CAGE analysis