Hb_000289_100

Information

Type -
Description -
Location Contig289: 183312-186198
Sequence    

Annotation

kegg
ID rcu:RCOM_0723560
description carbonyl reductase, putative (EC:1.1.1.189)
nr
ID XP_002524868.1
description carbonyl reductase, putative [Ricinus communis]
swissprot
ID Q9M2E2
description (+)-neomenthol dehydrogenase OS=Arabidopsis thaliana GN=SDR1 PE=1 SV=1
trembl
ID B9SFU9
description Carbonyl reductase, putative OS=Ricinus communis GN=RCOM_0723560 PE=3 SV=1
Gene Ontology
ID GO:0050221
description (+)-neomenthol dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000289_100 0.0 - - carbonyl reductase, putative [Ricinus communis]
2 Hb_000108_090 0.1073413308 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
3 Hb_001634_080 0.1182086272 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
4 Hb_006788_100 0.1348558691 - - PREDICTED: uncharacterized protein LOC105649919 isoform X1 [Jatropha curcas]
5 Hb_005542_040 0.1350016948 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 55 [Jatropha curcas]
6 Hb_094148_010 0.1359388844 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
7 Hb_107809_010 0.1393191073 - - JHL06P13.14 [Jatropha curcas]
8 Hb_001565_010 0.1400166219 - - hypothetical protein JCGZ_07371 [Jatropha curcas]
9 Hb_007676_040 0.140982718 - - cellulose synthase, putative [Ricinus communis]
10 Hb_000008_080 0.1442980236 - - conserved hypothetical protein [Ricinus communis]
11 Hb_187991_010 0.1446064655 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
12 Hb_005276_220 0.1460026076 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
13 Hb_011472_020 0.1480180229 - - PREDICTED: mucin-17-like [Jatropha curcas]
14 Hb_039022_020 0.1485284064 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
15 Hb_000163_250 0.1485552268 - - unnamed protein product [Vitis vinifera]
16 Hb_032717_010 0.1538237157 - - unnamed protein product [Vitis vinifera]
17 Hb_001345_010 0.1540185405 - - hypothetical protein MIMGU_mgv1a010889mg [Erythranthe guttata]
18 Hb_000521_360 0.1542224025 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
19 Hb_133151_010 0.1569501315 - - NBS-LRR resistance gene-like protein ARGH30 [Populus trichocarpa]
20 Hb_000760_080 0.1590102877 - - mutt domain protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000289_100 Hb_000289_100 Hb_000108_090 Hb_000108_090 Hb_000289_100--Hb_000108_090 Hb_001634_080 Hb_001634_080 Hb_000289_100--Hb_001634_080 Hb_006788_100 Hb_006788_100 Hb_000289_100--Hb_006788_100 Hb_005542_040 Hb_005542_040 Hb_000289_100--Hb_005542_040 Hb_094148_010 Hb_094148_010 Hb_000289_100--Hb_094148_010 Hb_107809_010 Hb_107809_010 Hb_000289_100--Hb_107809_010 Hb_000108_090--Hb_001634_080 Hb_000108_090--Hb_107809_010 Hb_001565_010 Hb_001565_010 Hb_000108_090--Hb_001565_010 Hb_000108_090--Hb_005542_040 Hb_007676_040 Hb_007676_040 Hb_000108_090--Hb_007676_040 Hb_000108_090--Hb_094148_010 Hb_001634_080--Hb_107809_010 Hb_001634_080--Hb_005542_040 Hb_127661_010 Hb_127661_010 Hb_001634_080--Hb_127661_010 Hb_170878_050 Hb_170878_050 Hb_001634_080--Hb_170878_050 Hb_001634_080--Hb_007676_040 Hb_001819_010 Hb_001819_010 Hb_006788_100--Hb_001819_010 Hb_023344_130 Hb_023344_130 Hb_006788_100--Hb_023344_130 Hb_032717_010 Hb_032717_010 Hb_006788_100--Hb_032717_010 Hb_005276_220 Hb_005276_220 Hb_006788_100--Hb_005276_220 Hb_000840_050 Hb_000840_050 Hb_006788_100--Hb_000840_050 Hb_010417_100 Hb_010417_100 Hb_006788_100--Hb_010417_100 Hb_005542_040--Hb_107809_010 Hb_005542_040--Hb_007676_040 Hb_005542_040--Hb_005276_220 Hb_001318_120 Hb_001318_120 Hb_005542_040--Hb_001318_120 Hb_011472_020 Hb_011472_020 Hb_005542_040--Hb_011472_020 Hb_094148_010--Hb_001565_010 Hb_003224_010 Hb_003224_010 Hb_094148_010--Hb_003224_010 Hb_094148_010--Hb_001634_080 Hb_000261_370 Hb_000261_370 Hb_094148_010--Hb_000261_370 Hb_170878_070 Hb_170878_070 Hb_094148_010--Hb_170878_070 Hb_008783_020 Hb_008783_020 Hb_107809_010--Hb_008783_020 Hb_107809_010--Hb_005276_220 Hb_000521_360 Hb_000521_360 Hb_107809_010--Hb_000521_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0845169 1.38517 1.44572 0.552003 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.077367 0 0 1.85354 0.845365

CAGE analysis