Hb_092115_010

Information

Type -
Description -
Location Contig92115: 449-1636
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_092115_010 0.0 - - -
2 Hb_019516_020 0.1657789536 - - conserved hypothetical protein [Ricinus communis]
3 Hb_012340_080 0.1668727451 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
4 Hb_000331_290 0.1756506638 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006096_040 0.1774145596 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
6 Hb_011537_010 0.1784122044 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
7 Hb_001246_090 0.1793785106 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
8 Hb_171284_010 0.1808995377 - - -
9 Hb_009838_090 0.1829289561 - - PREDICTED: uncharacterized protein LOC105638421 isoform X2 [Jatropha curcas]
10 Hb_054127_040 0.1878308296 - - PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
11 Hb_000023_200 0.188555992 - - hypothetical protein POPTR_0018s02910g [Populus trichocarpa]
12 Hb_001257_080 0.1893269773 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001379_060 0.1895586821 - - PREDICTED: uncharacterized protein LOC105650815 isoform X1 [Jatropha curcas]
14 Hb_001143_170 0.1897347878 - - nucellin, putative [Ricinus communis]
15 Hb_000424_250 0.1898708591 - - PREDICTED: DNA cross-link repair protein SNM1 [Jatropha curcas]
16 Hb_001767_100 0.1912342169 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
17 Hb_000402_200 0.1942670827 - - PREDICTED: uncharacterized protein LOC105644655 [Jatropha curcas]
18 Hb_005000_210 0.1942791069 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
19 Hb_008175_040 0.1944603095 - - PREDICTED: sm-like protein LSM36B [Jatropha curcas]
20 Hb_000041_080 0.1949768908 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_092115_010 Hb_092115_010 Hb_019516_020 Hb_019516_020 Hb_092115_010--Hb_019516_020 Hb_012340_080 Hb_012340_080 Hb_092115_010--Hb_012340_080 Hb_000331_290 Hb_000331_290 Hb_092115_010--Hb_000331_290 Hb_006096_040 Hb_006096_040 Hb_092115_010--Hb_006096_040 Hb_011537_010 Hb_011537_010 Hb_092115_010--Hb_011537_010 Hb_001246_090 Hb_001246_090 Hb_092115_010--Hb_001246_090 Hb_027760_010 Hb_027760_010 Hb_019516_020--Hb_027760_010 Hb_029510_020 Hb_029510_020 Hb_019516_020--Hb_029510_020 Hb_002045_040 Hb_002045_040 Hb_019516_020--Hb_002045_040 Hb_001221_320 Hb_001221_320 Hb_019516_020--Hb_001221_320 Hb_019516_020--Hb_000331_290 Hb_002374_170 Hb_002374_170 Hb_019516_020--Hb_002374_170 Hb_021443_070 Hb_021443_070 Hb_012340_080--Hb_021443_070 Hb_001564_130 Hb_001564_130 Hb_012340_080--Hb_001564_130 Hb_010368_020 Hb_010368_020 Hb_012340_080--Hb_010368_020 Hb_001379_060 Hb_001379_060 Hb_012340_080--Hb_001379_060 Hb_000661_250 Hb_000661_250 Hb_012340_080--Hb_000661_250 Hb_000302_010 Hb_000302_010 Hb_012340_080--Hb_000302_010 Hb_002349_040 Hb_002349_040 Hb_000331_290--Hb_002349_040 Hb_000331_290--Hb_006096_040 Hb_006634_040 Hb_006634_040 Hb_000331_290--Hb_006634_040 Hb_001484_060 Hb_001484_060 Hb_000331_290--Hb_001484_060 Hb_001124_120 Hb_001124_120 Hb_000331_290--Hb_001124_120 Hb_007086_010 Hb_007086_010 Hb_000331_290--Hb_007086_010 Hb_004046_040 Hb_004046_040 Hb_006096_040--Hb_004046_040 Hb_000933_150 Hb_000933_150 Hb_006096_040--Hb_000933_150 Hb_000676_050 Hb_000676_050 Hb_006096_040--Hb_000676_050 Hb_002687_140 Hb_002687_140 Hb_006096_040--Hb_002687_140 Hb_000482_110 Hb_000482_110 Hb_006096_040--Hb_000482_110 Hb_003688_100 Hb_003688_100 Hb_011537_010--Hb_003688_100 Hb_000392_270 Hb_000392_270 Hb_011537_010--Hb_000392_270 Hb_005489_130 Hb_005489_130 Hb_011537_010--Hb_005489_130 Hb_000045_130 Hb_000045_130 Hb_011537_010--Hb_000045_130 Hb_011794_090 Hb_011794_090 Hb_011537_010--Hb_011794_090 Hb_003551_020 Hb_003551_020 Hb_011537_010--Hb_003551_020 Hb_001135_050 Hb_001135_050 Hb_001246_090--Hb_001135_050 Hb_000494_020 Hb_000494_020 Hb_001246_090--Hb_000494_020 Hb_022250_040 Hb_022250_040 Hb_001246_090--Hb_022250_040 Hb_003392_040 Hb_003392_040 Hb_001246_090--Hb_003392_040 Hb_002105_090 Hb_002105_090 Hb_001246_090--Hb_002105_090 Hb_004324_310 Hb_004324_310 Hb_001246_090--Hb_004324_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.216742 0.053764 0.109868 0.115148 0.295458 0.053243
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.322957 0.217733 0.134225 0.0728399 0

CAGE analysis