Hb_024066_030

Information

Type -
Description -
Location Contig24066: 27798-36739
Sequence    

Annotation

kegg
ID rcu:RCOM_0827850
description beta-glucosidase, putative (EC:3.2.1.21)
nr
ID XP_012074776.1
description PREDICTED: beta-glucosidase 24-like [Jatropha curcas]
swissprot
ID Q7XKV2
description Beta-glucosidase 13 OS=Oryza sativa subsp. japonica GN=BGLU13 PE=2 SV=2
trembl
ID F6GUD2
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g01430 PE=3 SV=1
Gene Ontology
ID GO:0043231
description beta-glucosidase 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25215: 33522-34461
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024066_030 0.0 - - PREDICTED: beta-glucosidase 24-like [Jatropha curcas]
2 Hb_001269_440 0.1034129583 - - hypothetical protein JCGZ_04288 [Jatropha curcas]
3 Hb_000438_180 0.1063061776 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
4 Hb_000025_150 0.1090801052 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
5 Hb_021443_010 0.1107622043 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Jatropha curcas]
6 Hb_001584_250 0.1113106024 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
7 Hb_002025_190 0.1127873457 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]
8 Hb_000007_020 0.1128204472 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
9 Hb_001269_430 0.1169797724 - - hypothetical protein JCGZ_04286 [Jatropha curcas]
10 Hb_011930_090 0.1173089599 - - PREDICTED: thioredoxin H7-like [Jatropha curcas]
11 Hb_009851_120 0.1194654204 - - PREDICTED: RING-H2 zinc finger protein RHA4a [Jatropha curcas]
12 Hb_000628_100 0.1214508789 - - hypothetical protein MTR_1g019660 [Medicago truncatula]
13 Hb_003711_050 0.1238217064 - - Isoflavone reductase, putative [Ricinus communis]
14 Hb_000754_010 0.1250004324 - - unnamed protein product [Vitis vinifera]
15 Hb_002835_120 0.1259019666 - - PREDICTED: uncharacterized protein LOC105640304 [Jatropha curcas]
16 Hb_032260_040 0.1259362195 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002837_150 0.1264640865 - - hypothetical protein EUGRSUZ_L00324 [Eucalyptus grandis]
18 Hb_003090_250 0.1268464767 - - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 1 [Theobroma cacao]
19 Hb_001401_110 0.1293312257 - - hypothetical protein JCGZ_04272 [Jatropha curcas]
20 Hb_006061_020 0.131888996 transcription factor TF Family: bZIP bZIP family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_024066_030 Hb_024066_030 Hb_001269_440 Hb_001269_440 Hb_024066_030--Hb_001269_440 Hb_000438_180 Hb_000438_180 Hb_024066_030--Hb_000438_180 Hb_000025_150 Hb_000025_150 Hb_024066_030--Hb_000025_150 Hb_021443_010 Hb_021443_010 Hb_024066_030--Hb_021443_010 Hb_001584_250 Hb_001584_250 Hb_024066_030--Hb_001584_250 Hb_002025_190 Hb_002025_190 Hb_024066_030--Hb_002025_190 Hb_002837_150 Hb_002837_150 Hb_001269_440--Hb_002837_150 Hb_000086_160 Hb_000086_160 Hb_001269_440--Hb_000086_160 Hb_001269_440--Hb_002025_190 Hb_005183_020 Hb_005183_020 Hb_001269_440--Hb_005183_020 Hb_001269_440--Hb_000025_150 Hb_003212_030 Hb_003212_030 Hb_001269_440--Hb_003212_030 Hb_001401_110 Hb_001401_110 Hb_000438_180--Hb_001401_110 Hb_187906_010 Hb_187906_010 Hb_000438_180--Hb_187906_010 Hb_001269_430 Hb_001269_430 Hb_000438_180--Hb_001269_430 Hb_003711_050 Hb_003711_050 Hb_000438_180--Hb_003711_050 Hb_000438_180--Hb_000025_150 Hb_000438_180--Hb_021443_010 Hb_180293_010 Hb_180293_010 Hb_000025_150--Hb_180293_010 Hb_000025_150--Hb_001401_110 Hb_000025_150--Hb_001584_250 Hb_000025_150--Hb_001269_430 Hb_004807_070 Hb_004807_070 Hb_000025_150--Hb_004807_070 Hb_021443_010--Hb_003711_050 Hb_032260_040 Hb_032260_040 Hb_021443_010--Hb_032260_040 Hb_021443_010--Hb_001584_250 Hb_021443_010--Hb_001401_110 Hb_000201_050 Hb_000201_050 Hb_021443_010--Hb_000201_050 Hb_032299_020 Hb_032299_020 Hb_001584_250--Hb_032299_020 Hb_000429_080 Hb_000429_080 Hb_001584_250--Hb_000429_080 Hb_001584_250--Hb_000438_180 Hb_001584_250--Hb_000201_050 Hb_009851_120 Hb_009851_120 Hb_001584_250--Hb_009851_120 Hb_000007_020 Hb_000007_020 Hb_001584_250--Hb_000007_020 Hb_000999_060 Hb_000999_060 Hb_002025_190--Hb_000999_060 Hb_000628_100 Hb_000628_100 Hb_002025_190--Hb_000628_100 Hb_074100_010 Hb_074100_010 Hb_002025_190--Hb_074100_010 Hb_002025_190--Hb_009851_120 Hb_000027_010 Hb_000027_010 Hb_002025_190--Hb_000027_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.021471 0.876526 0.0491075 4.59314 0.0138624 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.244847

CAGE analysis