Hb_011794_040

Information

Type -
Description -
Location Contig11794: 24758-25330
Sequence    

Annotation

kegg
ID pop:POPTR_0002s16090g
description POPTRDRAFT_799047; hypothetical protein
nr
ID XP_011023338.1
description PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Populus euphratica]
swissprot
ID P93771
description Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. japonica GN=20ox1 PE=2 SV=2
trembl
ID B9GQ95
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s16090g PE=3 SV=1
Gene Ontology
ID GO:0005506
description gibberellin 3-beta-dioxygenase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011794_040 0.0 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Populus euphratica]
2 Hb_012753_130 0.1536917054 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002961_060 0.1715443511 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 [Populus euphratica]
4 Hb_000441_150 0.1734472741 - - PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic isoform X2 [Jatropha curcas]
5 Hb_167234_010 0.174252787 - - PREDICTED: AT-hook motif nuclear-localized protein 13-like [Jatropha curcas]
6 Hb_006588_150 0.1744453886 - - PREDICTED: steroid 5-alpha-reductase DET2 [Jatropha curcas]
7 Hb_001369_440 0.1770040535 - - PREDICTED: BAG family molecular chaperone regulator 7 [Jatropha curcas]
8 Hb_000856_180 0.1778290276 - - calcium-dependent protein kinase [Hevea brasiliensis]
9 Hb_001481_160 0.1787178128 - - PREDICTED: RING-H2 finger protein ATL22-like [Populus euphratica]
10 Hb_003211_010 0.1803465664 - - PREDICTED: uncharacterized protein LOC105635705 [Jatropha curcas]
11 Hb_000413_010 0.1841937477 - - hypothetical protein JCGZ_21316 [Jatropha curcas]
12 Hb_000140_480 0.1843984937 - - PREDICTED: uncharacterized protein LOC105637350 [Jatropha curcas]
13 Hb_002301_380 0.185427636 - - PREDICTED: VQ motif-containing protein 4 [Jatropha curcas]
14 Hb_067466_010 0.1856212384 - - ankyrin repeat protein [Bruguiera gymnorhiza]
15 Hb_000003_220 0.1871315389 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
16 Hb_000152_660 0.1888794967 - - PREDICTED: BAG family molecular chaperone regulator 7 [Jatropha curcas]
17 Hb_166236_010 0.1902364398 - - -
18 Hb_005000_260 0.1903198512 - - recA family protein [Populus trichocarpa]
19 Hb_004143_040 0.1910592188 - - argininosuccinate lyase, putative [Ricinus communis]
20 Hb_162150_010 0.191447194 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011794_040 Hb_011794_040 Hb_012753_130 Hb_012753_130 Hb_011794_040--Hb_012753_130 Hb_002961_060 Hb_002961_060 Hb_011794_040--Hb_002961_060 Hb_000441_150 Hb_000441_150 Hb_011794_040--Hb_000441_150 Hb_167234_010 Hb_167234_010 Hb_011794_040--Hb_167234_010 Hb_006588_150 Hb_006588_150 Hb_011794_040--Hb_006588_150 Hb_001369_440 Hb_001369_440 Hb_011794_040--Hb_001369_440 Hb_012753_130--Hb_002961_060 Hb_000413_010 Hb_000413_010 Hb_012753_130--Hb_000413_010 Hb_000227_240 Hb_000227_240 Hb_012753_130--Hb_000227_240 Hb_001481_120 Hb_001481_120 Hb_012753_130--Hb_001481_120 Hb_000032_620 Hb_000032_620 Hb_012753_130--Hb_000032_620 Hb_170487_020 Hb_170487_020 Hb_002961_060--Hb_170487_020 Hb_074715_010 Hb_074715_010 Hb_002961_060--Hb_074715_010 Hb_005048_130 Hb_005048_130 Hb_002961_060--Hb_005048_130 Hb_004143_040 Hb_004143_040 Hb_002961_060--Hb_004143_040 Hb_009564_030 Hb_009564_030 Hb_002961_060--Hb_009564_030 Hb_002961_060--Hb_000227_240 Hb_002344_060 Hb_002344_060 Hb_000441_150--Hb_002344_060 Hb_000221_250 Hb_000221_250 Hb_000441_150--Hb_000221_250 Hb_015175_050 Hb_015175_050 Hb_000441_150--Hb_015175_050 Hb_010417_080 Hb_010417_080 Hb_000441_150--Hb_010417_080 Hb_000152_660 Hb_000152_660 Hb_000441_150--Hb_000152_660 Hb_002667_060 Hb_002667_060 Hb_000441_150--Hb_002667_060 Hb_003211_010 Hb_003211_010 Hb_167234_010--Hb_003211_010 Hb_118026_010 Hb_118026_010 Hb_167234_010--Hb_118026_010 Hb_030736_070 Hb_030736_070 Hb_167234_010--Hb_030736_070 Hb_056987_010 Hb_056987_010 Hb_167234_010--Hb_056987_010 Hb_004586_280 Hb_004586_280 Hb_167234_010--Hb_004586_280 Hb_001055_030 Hb_001055_030 Hb_167234_010--Hb_001055_030 Hb_000740_110 Hb_000740_110 Hb_006588_150--Hb_000740_110 Hb_002876_290 Hb_002876_290 Hb_006588_150--Hb_002876_290 Hb_006588_150--Hb_001369_440 Hb_006588_150--Hb_003211_010 Hb_022400_010 Hb_022400_010 Hb_006588_150--Hb_022400_010 Hb_005214_090 Hb_005214_090 Hb_006588_150--Hb_005214_090 Hb_008177_030 Hb_008177_030 Hb_001369_440--Hb_008177_030 Hb_001369_440--Hb_000441_150 Hb_001369_440--Hb_002667_060 Hb_003747_010 Hb_003747_010 Hb_001369_440--Hb_003747_010 Hb_000640_120 Hb_000640_120 Hb_001369_440--Hb_000640_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.363523 0.317816 0.1065 0.233902 0.0936795 0.280167
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.216439 0.170086 0.147687 0.384745 0

CAGE analysis