Hb_008406_120

Information

Type -
Description -
Location Contig8406: 81884-84863
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008406_120 0.0 - - -
2 Hb_002483_020 0.2732096972 - - -
3 Hb_000062_380 0.2736248885 - - PREDICTED: putative F-box protein At1g67623 [Jatropha curcas]
4 Hb_045370_010 0.2905065578 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000318_260 0.2948283169 - - PREDICTED: cell division cycle-associated 7-like protein [Jatropha curcas]
6 Hb_103494_010 0.3034531933 - - -
7 Hb_002473_040 0.3075677845 - - PREDICTED: rRNA methyltransferase 3B, mitochondrial [Jatropha curcas]
8 Hb_006634_040 0.3127878732 - - hypothetical protein VITISV_030841 [Vitis vinifera]
9 Hb_000088_030 0.3136361496 - - hypothetical protein JCGZ_10947 [Jatropha curcas]
10 Hb_000025_070 0.3144283038 - - Uncharacterized protein TCM_040985 [Theobroma cacao]
11 Hb_156593_050 0.3172147764 - - PREDICTED: DNA-binding protein RHL1 isoform X1 [Jatropha curcas]
12 Hb_001276_020 0.319594485 - - hypothetical protein VITISV_003263 [Vitis vinifera]
13 Hb_003125_140 0.3218510542 - - PREDICTED: uncharacterized protein LOC105648796 [Jatropha curcas]
14 Hb_004635_130 0.3273552475 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
15 Hb_003788_050 0.330484749 - - PREDICTED: interferon-induced guanylate-binding protein 2-like [Jatropha curcas]
16 Hb_000525_060 0.3314429264 - - PREDICTED: uncharacterized protein LOC104211307 [Nicotiana sylvestris]
17 Hb_002267_090 0.3314452363 - - Cytochrome c oxidase assembly protein COX19, putative [Ricinus communis]
18 Hb_009803_040 0.3317780922 - - tetratricopeptide repeat-containing family protein [Populus trichocarpa]
19 Hb_000424_160 0.3337744622 - - hypothetical protein POPTR_0006s23570g [Populus trichocarpa]
20 Hb_001810_030 0.3351693359 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]

Gene co-expression network

sample Hb_008406_120 Hb_008406_120 Hb_002483_020 Hb_002483_020 Hb_008406_120--Hb_002483_020 Hb_000062_380 Hb_000062_380 Hb_008406_120--Hb_000062_380 Hb_045370_010 Hb_045370_010 Hb_008406_120--Hb_045370_010 Hb_000318_260 Hb_000318_260 Hb_008406_120--Hb_000318_260 Hb_103494_010 Hb_103494_010 Hb_008406_120--Hb_103494_010 Hb_002473_040 Hb_002473_040 Hb_008406_120--Hb_002473_040 Hb_140595_010 Hb_140595_010 Hb_002483_020--Hb_140595_010 Hb_002483_020--Hb_000062_380 Hb_002483_020--Hb_000318_260 Hb_000088_030 Hb_000088_030 Hb_002483_020--Hb_000088_030 Hb_089140_080 Hb_089140_080 Hb_002483_020--Hb_089140_080 Hb_006631_010 Hb_006631_010 Hb_002483_020--Hb_006631_010 Hb_001276_020 Hb_001276_020 Hb_000062_380--Hb_001276_020 Hb_000062_380--Hb_000318_260 Hb_012867_010 Hb_012867_010 Hb_000062_380--Hb_012867_010 Hb_005928_080 Hb_005928_080 Hb_000062_380--Hb_005928_080 Hb_000062_380--Hb_000088_030 Hb_007547_050 Hb_007547_050 Hb_045370_010--Hb_007547_050 Hb_003125_140 Hb_003125_140 Hb_045370_010--Hb_003125_140 Hb_004097_020 Hb_004097_020 Hb_045370_010--Hb_004097_020 Hb_045370_010--Hb_002483_020 Hb_045370_010--Hb_140595_010 Hb_005608_010 Hb_005608_010 Hb_045370_010--Hb_005608_010 Hb_004712_110 Hb_004712_110 Hb_000318_260--Hb_004712_110 Hb_000987_050 Hb_000987_050 Hb_000318_260--Hb_000987_050 Hb_000424_160 Hb_000424_160 Hb_000318_260--Hb_000424_160 Hb_000317_080 Hb_000317_080 Hb_000318_260--Hb_000317_080 Hb_000318_260--Hb_000088_030 Hb_000976_180 Hb_000976_180 Hb_000318_260--Hb_000976_180 Hb_006816_170 Hb_006816_170 Hb_103494_010--Hb_006816_170 Hb_000270_220 Hb_000270_220 Hb_103494_010--Hb_000270_220 Hb_000384_040 Hb_000384_040 Hb_103494_010--Hb_000384_040 Hb_001247_200 Hb_001247_200 Hb_103494_010--Hb_001247_200 Hb_000384_030 Hb_000384_030 Hb_103494_010--Hb_000384_030 Hb_004348_010 Hb_004348_010 Hb_103494_010--Hb_004348_010 Hb_004635_130 Hb_004635_130 Hb_002473_040--Hb_004635_130 Hb_010068_060 Hb_010068_060 Hb_002473_040--Hb_010068_060 Hb_097433_010 Hb_097433_010 Hb_002473_040--Hb_097433_010 Hb_000008_230 Hb_000008_230 Hb_002473_040--Hb_000008_230 Hb_085375_010 Hb_085375_010 Hb_002473_040--Hb_085375_010 Hb_030928_040 Hb_030928_040 Hb_002473_040--Hb_030928_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.102872 0 0.123416 0.109266 0.687387 0.0868312
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.120008 0.0942935 0 0.194838 0

CAGE analysis