Hb_002473_040

Information

Type -
Description -
Location Contig2473: 48361-52478
Sequence    

Annotation

kegg
ID rcu:RCOM_0410040
description RNA binding protein, putative
nr
ID XP_012081701.1
description PREDICTED: rRNA methyltransferase 3B, mitochondrial [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K0R1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18731 PE=4 SV=1
Gene Ontology
ID GO:0016740
description rrna methyltransferase mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002473_040 0.0 - - PREDICTED: rRNA methyltransferase 3B, mitochondrial [Jatropha curcas]
2 Hb_004635_130 0.185098287 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
3 Hb_010068_060 0.2154236753 - - protein translation factor SUI1 homolog 2 [Jatropha curcas]
4 Hb_097433_010 0.2222157112 - - PREDICTED: TPR repeat-containing thioredoxin TDX [Jatropha curcas]
5 Hb_000008_230 0.2410051244 - - hypothetical protein POPTR_0004s22120g [Populus trichocarpa]
6 Hb_085375_010 0.2414866423 - - protein with unknown function [Ricinus communis]
7 Hb_030928_040 0.2418795291 - - RNA-binding protein, putative [Ricinus communis]
8 Hb_003327_030 0.2430964387 - - Hsc70-interacting protein, putative [Ricinus communis]
9 Hb_030565_080 0.2478539678 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
10 Hb_003656_110 0.2484924348 - - phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
11 Hb_000190_190 0.250016871 - - PREDICTED: BI1-like protein [Gossypium raimondii]
12 Hb_000933_100 0.2535444437 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000755_080 0.2566738216 - - hypothetical protein RCOM_1016710 [Ricinus communis]
14 Hb_000941_140 0.2566802956 - - PREDICTED: activator of 90 kDa heat shock protein ATPase homolog 1 [Jatropha curcas]
15 Hb_002316_130 0.2592443579 - - hypothetical protein POPTR_0015s08440g [Populus trichocarpa]
16 Hb_035947_010 0.2594930685 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
17 Hb_000454_190 0.2614908506 - - PREDICTED: probable ribosome-binding factor A, chloroplastic [Jatropha curcas]
18 Hb_000028_040 0.2614972317 - - PREDICTED: prostaglandin E synthase 2-like [Jatropha curcas]
19 Hb_000243_090 0.2616126505 - - PREDICTED: protein RTE1-HOMOLOG isoform X1 [Jatropha curcas]
20 Hb_001810_030 0.2619508424 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]

Gene co-expression network

sample Hb_002473_040 Hb_002473_040 Hb_004635_130 Hb_004635_130 Hb_002473_040--Hb_004635_130 Hb_010068_060 Hb_010068_060 Hb_002473_040--Hb_010068_060 Hb_097433_010 Hb_097433_010 Hb_002473_040--Hb_097433_010 Hb_000008_230 Hb_000008_230 Hb_002473_040--Hb_000008_230 Hb_085375_010 Hb_085375_010 Hb_002473_040--Hb_085375_010 Hb_030928_040 Hb_030928_040 Hb_002473_040--Hb_030928_040 Hb_000755_080 Hb_000755_080 Hb_004635_130--Hb_000755_080 Hb_001051_090 Hb_001051_090 Hb_004635_130--Hb_001051_090 Hb_003327_030 Hb_003327_030 Hb_004635_130--Hb_003327_030 Hb_000787_090 Hb_000787_090 Hb_004635_130--Hb_000787_090 Hb_002896_060 Hb_002896_060 Hb_004635_130--Hb_002896_060 Hb_002814_120 Hb_002814_120 Hb_004635_130--Hb_002814_120 Hb_098315_070 Hb_098315_070 Hb_010068_060--Hb_098315_070 Hb_032202_170 Hb_032202_170 Hb_010068_060--Hb_032202_170 Hb_010068_060--Hb_004635_130 Hb_000163_240 Hb_000163_240 Hb_010068_060--Hb_000163_240 Hb_010068_060--Hb_000008_230 Hb_002344_090 Hb_002344_090 Hb_010068_060--Hb_002344_090 Hb_097433_010--Hb_003327_030 Hb_035947_010 Hb_035947_010 Hb_097433_010--Hb_035947_010 Hb_097433_010--Hb_085375_010 Hb_002918_310 Hb_002918_310 Hb_097433_010--Hb_002918_310 Hb_097433_010--Hb_004635_130 Hb_097433_010--Hb_002814_120 Hb_008749_050 Hb_008749_050 Hb_000008_230--Hb_008749_050 Hb_001769_020 Hb_001769_020 Hb_000008_230--Hb_001769_020 Hb_012340_020 Hb_012340_020 Hb_000008_230--Hb_012340_020 Hb_000008_230--Hb_002344_090 Hb_000008_230--Hb_035947_010 Hb_002374_440 Hb_002374_440 Hb_000008_230--Hb_002374_440 Hb_085375_010--Hb_000008_230 Hb_004712_110 Hb_004712_110 Hb_085375_010--Hb_004712_110 Hb_003125_140 Hb_003125_140 Hb_085375_010--Hb_003125_140 Hb_000206_130 Hb_000206_130 Hb_085375_010--Hb_000206_130 Hb_000580_130 Hb_000580_130 Hb_085375_010--Hb_000580_130 Hb_000236_240 Hb_000236_240 Hb_030928_040--Hb_000236_240 Hb_002316_130 Hb_002316_130 Hb_030928_040--Hb_002316_130 Hb_005618_050 Hb_005618_050 Hb_030928_040--Hb_005618_050 Hb_004785_100 Hb_004785_100 Hb_030928_040--Hb_004785_100 Hb_001821_160 Hb_001821_160 Hb_030928_040--Hb_001821_160 Hb_004837_190 Hb_004837_190 Hb_030928_040--Hb_004837_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0202827 0.094694 0.188933 0.113101 0.777657 0.0835972
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.139199 0.109487 0.0674765 0.102567 0.0750261

CAGE analysis