Hb_008021_080

Information

Type -
Description -
Location Contig8021: 89273-90027
Sequence    

Annotation

kegg
ID rcu:RCOM_1080770
description hypothetical protein
nr
ID XP_009758904.1
description PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 1-like [Nicotiana sylvestris]
swissprot
ID Q9SE37
description Protein RESTRICTED TEV MOVEMENT 1 OS=Arabidopsis thaliana GN=RTM1 PE=1 SV=1
trembl
ID B9RMG5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1080770 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58867: 89133-90251
cDNA
(Sanger)
(ID:Location)		 026_D12.ab1: 89320-90249

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008021_080 0.0 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 1-like [Nicotiana sylvestris]
2 Hb_136944_010 0.0976641136 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
3 Hb_025557_090 0.0981549352 - - hypothetical protein glysoja_034865 [Glycine soja]
4 Hb_006603_010 0.0999123497 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
5 Hb_006970_180 0.1017084559 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
6 Hb_151436_010 0.1027694093 - - PREDICTED: uncharacterized protein LOC105137019 [Populus euphratica]
7 Hb_022250_140 0.1083444881 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
8 Hb_007292_060 0.1087210229 - - PREDICTED: uncharacterized protein LOC105632853 [Jatropha curcas]
9 Hb_116349_080 0.1103992789 - - Nectarin-1 precursor, putative [Ricinus communis]
10 Hb_006816_060 0.1104665228 - - PREDICTED: phospholipid-metabolizing enzyme A-C1-like [Jatropha curcas]
11 Hb_009158_010 0.1115396292 - - PREDICTED: cytochrome P450 78A9 [Jatropha curcas]
12 Hb_000964_120 0.1191973165 - - DNA-damage-inducible protein f, putative [Ricinus communis]
13 Hb_002073_210 0.1205009538 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006570_170 0.1210001659 - - Gibberellin-regulated protein 1 precursor, putative [Ricinus communis]
15 Hb_011218_010 0.1212684692 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
16 Hb_118934_010 0.1214419526 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
17 Hb_000152_630 0.1220251061 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Jatropha curcas]
18 Hb_004102_180 0.12209703 - - zinc finger family protein [Populus trichocarpa]
19 Hb_000155_030 0.123041521 - - PREDICTED: uncharacterized protein LOC105649591 [Jatropha curcas]
20 Hb_085158_010 0.1247257244 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_008021_080 Hb_008021_080 Hb_136944_010 Hb_136944_010 Hb_008021_080--Hb_136944_010 Hb_025557_090 Hb_025557_090 Hb_008021_080--Hb_025557_090 Hb_006603_010 Hb_006603_010 Hb_008021_080--Hb_006603_010 Hb_006970_180 Hb_006970_180 Hb_008021_080--Hb_006970_180 Hb_151436_010 Hb_151436_010 Hb_008021_080--Hb_151436_010 Hb_022250_140 Hb_022250_140 Hb_008021_080--Hb_022250_140 Hb_000175_600 Hb_000175_600 Hb_136944_010--Hb_000175_600 Hb_007292_060 Hb_007292_060 Hb_136944_010--Hb_007292_060 Hb_116349_080 Hb_116349_080 Hb_136944_010--Hb_116349_080 Hb_000964_120 Hb_000964_120 Hb_136944_010--Hb_000964_120 Hb_004102_180 Hb_004102_180 Hb_136944_010--Hb_004102_180 Hb_000731_180 Hb_000731_180 Hb_136944_010--Hb_000731_180 Hb_009158_010 Hb_009158_010 Hb_025557_090--Hb_009158_010 Hb_025557_090--Hb_116349_080 Hb_000155_030 Hb_000155_030 Hb_025557_090--Hb_000155_030 Hb_025557_090--Hb_022250_140 Hb_000230_220 Hb_000230_220 Hb_025557_090--Hb_000230_220 Hb_025557_090--Hb_000964_120 Hb_006846_050 Hb_006846_050 Hb_006603_010--Hb_006846_050 Hb_006603_010--Hb_006970_180 Hb_006618_060 Hb_006618_060 Hb_006603_010--Hb_006618_060 Hb_006603_010--Hb_151436_010 Hb_085158_010 Hb_085158_010 Hb_006603_010--Hb_085158_010 Hb_006889_010 Hb_006889_010 Hb_006603_010--Hb_006889_010 Hb_006970_180--Hb_151436_010 Hb_006970_180--Hb_022250_140 Hb_006970_180--Hb_085158_010 Hb_000431_050 Hb_000431_050 Hb_006970_180--Hb_000431_050 Hb_002073_210 Hb_002073_210 Hb_006970_180--Hb_002073_210 Hb_151436_010--Hb_000431_050 Hb_151436_010--Hb_085158_010 Hb_151436_010--Hb_002073_210 Hb_151436_010--Hb_022250_140 Hb_006570_170 Hb_006570_170 Hb_022250_140--Hb_006570_170 Hb_006816_060 Hb_006816_060 Hb_022250_140--Hb_006816_060 Hb_001634_050 Hb_001634_050 Hb_022250_140--Hb_001634_050 Hb_022250_140--Hb_002073_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.183228 0.562464 6.28913 0.118668 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.40338

CAGE analysis