Hb_007718_030

Information

Type -
Description -
Location Contig7718: 21035-23922
Sequence    

Annotation

kegg
ID rcu:RCOM_1113060
description leucine-rich repeat receptor protein kinase exs precursor, putative (EC:1.3.1.74)
nr
ID XP_002531725.1
description leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
swissprot
ID C0LGQ5
description LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1
trembl
ID B9T0F6
description Leucine-rich repeat receptor protein kinase exs, putative OS=Ricinus communis GN=RCOM_1113060 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57680: 22390-22526 , PASA_asmbl_57681: 23625-23735
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007718_030 0.0 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
2 Hb_002407_090 0.0833113535 - - hypothetical protein JCGZ_00747 [Jatropha curcas]
3 Hb_025557_060 0.087313154 transcription factor TF Family: MYB Myb-related protein 306, putative isoform 1 [Theobroma cacao]
4 Hb_001321_010 0.0876826453 - - HIGH-CHLOROPHYLL-FLUORESCENCE 101 family protein [Populus trichocarpa]
5 Hb_011104_020 0.0884251084 - - PREDICTED: ABC transporter B family member 2-like [Jatropha curcas]
6 Hb_096224_050 0.0892093556 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g31250 [Jatropha curcas]
7 Hb_000270_090 0.0892141349 - - nitrate transporter, putative [Ricinus communis]
8 Hb_018591_020 0.0893477753 - - Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor, putative [Ricinus communis]
9 Hb_186844_010 0.090944192 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
10 Hb_000608_290 0.0919188295 - - thioredoxin f-type, putative [Ricinus communis]
11 Hb_000270_640 0.0942335909 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
12 Hb_001051_010 0.0962339056 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
13 Hb_000140_460 0.0983528346 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
14 Hb_001699_140 0.0994593969 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
15 Hb_119600_030 0.1028845388 - - PREDICTED: uncharacterized protein LOC105635187 [Jatropha curcas]
16 Hb_002073_150 0.1029120523 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
17 Hb_033363_040 0.103306054 - - PREDICTED: probable galacturonosyltransferase-like 3 [Jatropha curcas]
18 Hb_004994_030 0.1075778857 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
19 Hb_002007_220 0.1090805671 - - PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Jatropha curcas]
20 Hb_000373_010 0.110191142 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007718_030 Hb_007718_030 Hb_002407_090 Hb_002407_090 Hb_007718_030--Hb_002407_090 Hb_025557_060 Hb_025557_060 Hb_007718_030--Hb_025557_060 Hb_001321_010 Hb_001321_010 Hb_007718_030--Hb_001321_010 Hb_011104_020 Hb_011104_020 Hb_007718_030--Hb_011104_020 Hb_096224_050 Hb_096224_050 Hb_007718_030--Hb_096224_050 Hb_000270_090 Hb_000270_090 Hb_007718_030--Hb_000270_090 Hb_046739_010 Hb_046739_010 Hb_002407_090--Hb_046739_010 Hb_000608_290 Hb_000608_290 Hb_002407_090--Hb_000608_290 Hb_011028_030 Hb_011028_030 Hb_002407_090--Hb_011028_030 Hb_002407_090--Hb_011104_020 Hb_002407_090--Hb_000270_090 Hb_000373_010 Hb_000373_010 Hb_002407_090--Hb_000373_010 Hb_018591_020 Hb_018591_020 Hb_025557_060--Hb_018591_020 Hb_025557_060--Hb_096224_050 Hb_004979_070 Hb_004979_070 Hb_025557_060--Hb_004979_070 Hb_007904_110 Hb_007904_110 Hb_025557_060--Hb_007904_110 Hb_001699_140 Hb_001699_140 Hb_025557_060--Hb_001699_140 Hb_119600_030 Hb_119600_030 Hb_025557_060--Hb_119600_030 Hb_001321_010--Hb_000270_090 Hb_004994_030 Hb_004994_030 Hb_001321_010--Hb_004994_030 Hb_001321_010--Hb_011104_020 Hb_002007_220 Hb_002007_220 Hb_001321_010--Hb_002007_220 Hb_001321_010--Hb_018591_020 Hb_001321_010--Hb_002407_090 Hb_002073_150 Hb_002073_150 Hb_011104_020--Hb_002073_150 Hb_000483_430 Hb_000483_430 Hb_011104_020--Hb_000483_430 Hb_011104_020--Hb_000270_090 Hb_011104_020--Hb_004994_030 Hb_012389_010 Hb_012389_010 Hb_011104_020--Hb_012389_010 Hb_096224_050--Hb_007904_110 Hb_096224_050--Hb_004979_070 Hb_000644_010 Hb_000644_010 Hb_096224_050--Hb_000644_010 Hb_004979_080 Hb_004979_080 Hb_096224_050--Hb_004979_080 Hb_000027_110 Hb_000027_110 Hb_096224_050--Hb_000027_110 Hb_033363_030 Hb_033363_030 Hb_096224_050--Hb_033363_030 Hb_000270_090--Hb_004994_030 Hb_000270_090--Hb_001699_140 Hb_000270_090--Hb_002007_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.188185 0.530571 0.291161 0.00680682 0.0118827
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0529746 0.905418

CAGE analysis