Hb_005679_100

Information

Type -
Description -
Location Contig5679: 285237-285689
Sequence    

Annotation

kegg
ID pop:POPTR_0013s15630g
description POPTRDRAFT_571939; hypothetical protein
nr
ID XP_002319985.1
description hypothetical protein POPTR_0013s15630g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9I782
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s15630g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005679_100 0.0 - - hypothetical protein POPTR_0013s15630g [Populus trichocarpa]
2 Hb_001104_240 0.219236755 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
3 Hb_004410_150 0.2301394526 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 1 [Jatropha curcas]
4 Hb_004788_040 0.2366416504 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_000140_410 0.2390770871 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
6 Hb_044724_010 0.2492239066 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
7 Hb_001529_050 0.252313859 - - PREDICTED: ribulose bisphosphate carboxylase small chain clone 512-like [Jatropha curcas]
8 Hb_001828_020 0.2538841133 - - hypothetical protein CISIN_1g010132mg [Citrus sinensis]
9 Hb_001635_050 0.2558517472 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Nicotiana sylvestris]
10 Hb_001269_690 0.2588334372 - - conserved hypothetical protein [Ricinus communis]
11 Hb_112023_010 0.2609149683 - - hypothetical protein EUGRSUZ_C03826 [Eucalyptus grandis]
12 Hb_000863_030 0.261800158 transcription factor TF Family: Orphans two-component system sensor histidine kinase/response regulator, putative [Ricinus communis]
13 Hb_000086_660 0.261822058 - - PREDICTED: phytosulfokine receptor 1-like [Jatropha curcas]
14 Hb_001148_030 0.2637179853 - - -
15 Hb_001507_100 0.2684303391 - - cytochrome P450, putative [Ricinus communis]
16 Hb_010334_020 0.2702800783 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 1-like [Sesamum indicum]
17 Hb_011861_120 0.2715046454 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
18 Hb_007259_040 0.2719868288 - - hypothetical protein VITISV_005492 [Vitis vinifera]
19 Hb_006586_030 0.2720049679 - - PREDICTED: transcription factor LHW isoform X1 [Jatropha curcas]
20 Hb_007785_010 0.2731576027 - - glutathione peroxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005679_100 Hb_005679_100 Hb_001104_240 Hb_001104_240 Hb_005679_100--Hb_001104_240 Hb_004410_150 Hb_004410_150 Hb_005679_100--Hb_004410_150 Hb_004788_040 Hb_004788_040 Hb_005679_100--Hb_004788_040 Hb_000140_410 Hb_000140_410 Hb_005679_100--Hb_000140_410 Hb_044724_010 Hb_044724_010 Hb_005679_100--Hb_044724_010 Hb_001529_050 Hb_001529_050 Hb_005679_100--Hb_001529_050 Hb_006586_030 Hb_006586_030 Hb_001104_240--Hb_006586_030 Hb_000086_660 Hb_000086_660 Hb_001104_240--Hb_000086_660 Hb_001269_690 Hb_001269_690 Hb_001104_240--Hb_001269_690 Hb_002827_020 Hb_002827_020 Hb_001104_240--Hb_002827_020 Hb_001104_240--Hb_001529_050 Hb_000200_280 Hb_000200_280 Hb_001104_240--Hb_000200_280 Hb_001625_010 Hb_001625_010 Hb_004410_150--Hb_001625_010 Hb_002805_300 Hb_002805_300 Hb_004410_150--Hb_002805_300 Hb_001799_190 Hb_001799_190 Hb_004410_150--Hb_001799_190 Hb_001248_030 Hb_001248_030 Hb_004410_150--Hb_001248_030 Hb_004410_150--Hb_044724_010 Hb_002524_030 Hb_002524_030 Hb_004410_150--Hb_002524_030 Hb_003623_070 Hb_003623_070 Hb_004788_040--Hb_003623_070 Hb_001635_050 Hb_001635_050 Hb_004788_040--Hb_001635_050 Hb_004788_040--Hb_001269_690 Hb_004788_040--Hb_000140_410 Hb_004788_040--Hb_001529_050 Hb_004788_040--Hb_001104_240 Hb_000140_410--Hb_001269_690 Hb_008066_070 Hb_008066_070 Hb_000140_410--Hb_008066_070 Hb_020805_170 Hb_020805_170 Hb_000140_410--Hb_020805_170 Hb_000905_170 Hb_000905_170 Hb_000140_410--Hb_000905_170 Hb_000140_410--Hb_001529_050 Hb_000140_410--Hb_003623_070 Hb_002774_090 Hb_002774_090 Hb_044724_010--Hb_002774_090 Hb_007259_040 Hb_007259_040 Hb_044724_010--Hb_007259_040 Hb_005779_040 Hb_005779_040 Hb_044724_010--Hb_005779_040 Hb_003894_100 Hb_003894_100 Hb_044724_010--Hb_003894_100 Hb_003504_040 Hb_003504_040 Hb_044724_010--Hb_003504_040 Hb_001529_050--Hb_001269_690 Hb_138585_110 Hb_138585_110 Hb_001529_050--Hb_138585_110 Hb_001529_050--Hb_003623_070 Hb_001529_050--Hb_000086_660
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.91759 3.11456 0.0522826 1.76504 0.580461 0.662575
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.4279 0.623107 0 4.45104 0

CAGE analysis