Hb_005511_170

Information

Type -
Description -
Location Contig5511: 149261-149975
Sequence    

Annotation

kegg
ID pxb:103953819
description uncharacterized LOC103953819
nr
ID KDO67561.1
description hypothetical protein CISIN_1g030718mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067FWG7
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030718mg PE=4 SV=1
Gene Ontology
ID GO:0003743
description probable rna-binding protein eif1ad

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48285: 145106-149965
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005511_170 0.0 - - hypothetical protein CISIN_1g030718mg [Citrus sinensis]
2 Hb_001195_040 0.1250795587 - - PREDICTED: proteasome subunit alpha type-1-B-like [Gossypium raimondii]
3 Hb_008112_040 0.1279933041 - - PREDICTED: uncharacterized protein LOC105637336 [Jatropha curcas]
4 Hb_001005_060 0.14055103 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase MAK3 [Jatropha curcas]
5 Hb_022132_010 0.1507679788 - - unknown [Medicago truncatula]
6 Hb_004363_010 0.1509877616 - - hypothetical protein CISIN_1g0405721mg, partial [Citrus sinensis]
7 Hb_092337_020 0.1526190124 - - hypothetical protein B456_013G264900 [Gossypium raimondii]
8 Hb_000866_280 0.1560253977 - - PREDICTED: seven transmembrane domain-containing tyrosine-protein kinase 1-like [Jatropha curcas]
9 Hb_001427_050 0.1579863689 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
10 Hb_001934_030 0.1597022238 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
11 Hb_000116_310 0.160770127 - - 50S robosomal protein L11, putative [Ricinus communis]
12 Hb_004531_070 0.1644055158 - - PREDICTED: cytochrome c oxidase assembly protein COX19-like [Jatropha curcas]
13 Hb_000661_140 0.1656783569 - - PREDICTED: uncharacterized protein LOC105648317 isoform X2 [Jatropha curcas]
14 Hb_003621_020 0.1657178419 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
15 Hb_000836_430 0.1660626559 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
16 Hb_000025_230 0.1693283478 - - PREDICTED: 10 kDa chaperonin [Vitis vinifera]
17 Hb_002687_140 0.1698465714 - - hypothetical protein JCGZ_24463 [Jatropha curcas]
18 Hb_012016_010 0.1701346584 - - PREDICTED: glycine-rich RNA-binding protein 6, mitochondrial [Jatropha curcas]
19 Hb_000976_260 0.1704367771 - - -
20 Hb_001459_080 0.1713027066 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]

Gene co-expression network

sample Hb_005511_170 Hb_005511_170 Hb_001195_040 Hb_001195_040 Hb_005511_170--Hb_001195_040 Hb_008112_040 Hb_008112_040 Hb_005511_170--Hb_008112_040 Hb_001005_060 Hb_001005_060 Hb_005511_170--Hb_001005_060 Hb_022132_010 Hb_022132_010 Hb_005511_170--Hb_022132_010 Hb_004363_010 Hb_004363_010 Hb_005511_170--Hb_004363_010 Hb_092337_020 Hb_092337_020 Hb_005511_170--Hb_092337_020 Hb_000661_140 Hb_000661_140 Hb_001195_040--Hb_000661_140 Hb_002639_150 Hb_002639_150 Hb_001195_040--Hb_002639_150 Hb_000853_430 Hb_000853_430 Hb_001195_040--Hb_000853_430 Hb_000926_310 Hb_000926_310 Hb_001195_040--Hb_000926_310 Hb_001934_030 Hb_001934_030 Hb_001195_040--Hb_001934_030 Hb_000003_600 Hb_000003_600 Hb_001195_040--Hb_000003_600 Hb_007154_020 Hb_007154_020 Hb_008112_040--Hb_007154_020 Hb_013405_060 Hb_013405_060 Hb_008112_040--Hb_013405_060 Hb_008112_040--Hb_004363_010 Hb_000025_230 Hb_000025_230 Hb_008112_040--Hb_000025_230 Hb_028841_030 Hb_028841_030 Hb_008112_040--Hb_028841_030 Hb_003687_230 Hb_003687_230 Hb_008112_040--Hb_003687_230 Hb_001005_060--Hb_001934_030 Hb_001117_100 Hb_001117_100 Hb_001005_060--Hb_001117_100 Hb_004204_070 Hb_004204_070 Hb_001005_060--Hb_004204_070 Hb_012627_050 Hb_012627_050 Hb_001005_060--Hb_012627_050 Hb_002918_210 Hb_002918_210 Hb_001005_060--Hb_002918_210 Hb_003069_010 Hb_003069_010 Hb_001005_060--Hb_003069_010 Hb_022132_010--Hb_004363_010 Hb_000976_260 Hb_000976_260 Hb_022132_010--Hb_000976_260 Hb_002026_140 Hb_002026_140 Hb_022132_010--Hb_002026_140 Hb_022132_010--Hb_002639_150 Hb_002292_010 Hb_002292_010 Hb_022132_010--Hb_002292_010 Hb_000012_020 Hb_000012_020 Hb_022132_010--Hb_000012_020 Hb_004363_010--Hb_002292_010 Hb_004363_010--Hb_000976_260 Hb_003050_200 Hb_003050_200 Hb_004363_010--Hb_003050_200 Hb_007441_210 Hb_007441_210 Hb_004363_010--Hb_007441_210 Hb_007007_050 Hb_007007_050 Hb_004363_010--Hb_007007_050 Hb_000563_330 Hb_000563_330 Hb_092337_020--Hb_000563_330 Hb_063805_010 Hb_063805_010 Hb_092337_020--Hb_063805_010 Hb_027472_210 Hb_027472_210 Hb_092337_020--Hb_027472_210 Hb_000261_250 Hb_000261_250 Hb_092337_020--Hb_000261_250 Hb_000175_090 Hb_000175_090 Hb_092337_020--Hb_000175_090 Hb_007123_070 Hb_007123_070 Hb_092337_020--Hb_007123_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
69.1129 26.28 70.4291 3.38248 45.2289 32.388
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.9023 64.318 21.7266 9.1502 8.54184

CAGE analysis