Hb_004699_020

Information

Type -
Description -
Location Contig4699: 75945-81185
Sequence    

Annotation

kegg
ID mdm:103410170
description uncharacterized LOC103410170
nr
ID XP_008347142.1
description PREDICTED: uncharacterized protein LOC103410170 [Malus domestica]
swissprot
ID P03356
description Pol polyprotein OS=AKV murine leukemia virus GN=pol PE=3 SV=2
trembl
ID Q2AA50
description Retrotransposon gag protein OS=Asparagus officinalis GN=19.t00014 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004699_020 0.0 - - PREDICTED: uncharacterized protein LOC103410170 [Malus domestica]
2 Hb_084391_010 0.2576602441 - - xylulose kinase, putative [Ricinus communis]
3 Hb_011360_020 0.2730449946 - - -
4 Hb_001623_520 0.2759613478 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
5 Hb_007757_140 0.355334672 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
6 Hb_128558_010 0.362790587 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
7 Hb_000951_040 0.365130002 transcription factor TF Family: M-type hypothetical protein JCGZ_09931 [Jatropha curcas]
8 Hb_000392_330 0.3748766167 - - PREDICTED: protein kinase 2B, chloroplastic-like [Jatropha curcas]
9 Hb_000103_050 0.3831756176 - - hypothetical protein CICLE_v10006287mg [Citrus clementina]
10 Hb_001966_010 0.3865713575 - - PREDICTED: uncharacterized protein LOC102611294 [Citrus sinensis]
11 Hb_003972_020 0.3879393885 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000453_220 0.3923466641 - - hypothetical protein JCGZ_11079 [Jatropha curcas]
13 Hb_008516_020 0.3937388213 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
14 Hb_089160_010 0.3985025009 - - PREDICTED: uncharacterized protein LOC105793196 [Gossypium raimondii]
15 Hb_021419_050 0.4025658263 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Malus domestica]
16 Hb_000252_030 0.4029673606 - - Heme-binding protein, putative [Ricinus communis]
17 Hb_000892_070 0.4055132759 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Jatropha curcas]
18 Hb_004048_060 0.4135222432 - - hypothetical protein PRUPE_ppa023788mg, partial [Prunus persica]
19 Hb_000948_100 0.416718077 - - -
20 Hb_003906_090 0.4185150269 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38010 [Jatropha curcas]

Gene co-expression network

sample Hb_004699_020 Hb_004699_020 Hb_084391_010 Hb_084391_010 Hb_004699_020--Hb_084391_010 Hb_011360_020 Hb_011360_020 Hb_004699_020--Hb_011360_020 Hb_001623_520 Hb_001623_520 Hb_004699_020--Hb_001623_520 Hb_007757_140 Hb_007757_140 Hb_004699_020--Hb_007757_140 Hb_128558_010 Hb_128558_010 Hb_004699_020--Hb_128558_010 Hb_000951_040 Hb_000951_040 Hb_004699_020--Hb_000951_040 Hb_084391_010--Hb_011360_020 Hb_084391_010--Hb_001623_520 Hb_003972_020 Hb_003972_020 Hb_084391_010--Hb_003972_020 Hb_000103_050 Hb_000103_050 Hb_084391_010--Hb_000103_050 Hb_008516_020 Hb_008516_020 Hb_084391_010--Hb_008516_020 Hb_011360_020--Hb_000103_050 Hb_000756_020 Hb_000756_020 Hb_011360_020--Hb_000756_020 Hb_163268_010 Hb_163268_010 Hb_011360_020--Hb_163268_010 Hb_001741_130 Hb_001741_130 Hb_011360_020--Hb_001741_130 Hb_001623_520--Hb_000951_040 Hb_019520_010 Hb_019520_010 Hb_001623_520--Hb_019520_010 Hb_001623_520--Hb_003972_020 Hb_001623_520--Hb_011360_020 Hb_000892_070 Hb_000892_070 Hb_007757_140--Hb_000892_070 Hb_006586_010 Hb_006586_010 Hb_007757_140--Hb_006586_010 Hb_008438_010 Hb_008438_010 Hb_007757_140--Hb_008438_010 Hb_001477_150 Hb_001477_150 Hb_007757_140--Hb_001477_150 Hb_080749_010 Hb_080749_010 Hb_007757_140--Hb_080749_010 Hb_001951_250 Hb_001951_250 Hb_007757_140--Hb_001951_250 Hb_000866_150 Hb_000866_150 Hb_128558_010--Hb_000866_150 Hb_070926_010 Hb_070926_010 Hb_128558_010--Hb_070926_010 Hb_002609_180 Hb_002609_180 Hb_128558_010--Hb_002609_180 Hb_000421_190 Hb_000421_190 Hb_128558_010--Hb_000421_190 Hb_096225_020 Hb_096225_020 Hb_128558_010--Hb_096225_020 Hb_000816_110 Hb_000816_110 Hb_128558_010--Hb_000816_110 Hb_007753_010 Hb_007753_010 Hb_000951_040--Hb_007753_010 Hb_000951_040--Hb_000421_190 Hb_004871_050 Hb_004871_050 Hb_000951_040--Hb_004871_050 Hb_001396_230 Hb_001396_230 Hb_000951_040--Hb_001396_230 Hb_000951_040--Hb_008516_020 Hb_001153_220 Hb_001153_220 Hb_000951_040--Hb_001153_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00429756 0 0 0 0.00759909
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00776103 0.0149215 0 0

CAGE analysis