Hb_000103_050

Information

Type -
Description -
Location Contig103: 34208-34552
Sequence    

Annotation

kegg
ID cic:CICLE_v10006287mg
description hypothetical protein
nr
ID XP_006419989.1
description hypothetical protein CICLE_v10006287mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID A0A067G7D4
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g040512mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000103_050 0.0 - - hypothetical protein CICLE_v10006287mg [Citrus clementina]
2 Hb_013483_010 0.2055497287 - - -
3 Hb_001507_010 0.2060704012 - - PREDICTED: xylose isomerase [Jatropha curcas]
4 Hb_010710_050 0.266829787 - - -
5 Hb_008516_020 0.278776861 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
6 Hb_148422_010 0.2836228525 - - PREDICTED: uncharacterized protein LOC104908874, partial [Beta vulgaris subsp. vulgaris]
7 Hb_084391_010 0.2880140315 - - xylulose kinase, putative [Ricinus communis]
8 Hb_011360_020 0.2914165059 - - -
9 Hb_000078_020 0.2977872074 - - -
10 Hb_011344_180 0.303778389 - - hypothetical protein JCGZ_20759 [Jatropha curcas]
11 Hb_001425_060 0.307190889 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000190_110 0.3098327022 - - -
13 Hb_012395_200 0.3169152755 - - conserved hypothetical protein [Ricinus communis]
14 Hb_091433_030 0.3182273321 - - -
15 Hb_003972_020 0.3224883312 - - conserved hypothetical protein [Ricinus communis]
16 Hb_020247_060 0.3238878981 - - UDP-glucoronosyl/UDP-glucosyl transferase family protein [Populus trichocarpa]
17 Hb_004324_150 0.3246167579 - - -
18 Hb_003060_030 0.324793798 - - conserved hypothetical protein 16 [Hevea brasiliensis]
19 Hb_000039_170 0.324879952 - - protein MOTHER of FT and TF 1-like [Jatropha curcas]
20 Hb_000392_330 0.3252210809 - - PREDICTED: protein kinase 2B, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000103_050 Hb_000103_050 Hb_013483_010 Hb_013483_010 Hb_000103_050--Hb_013483_010 Hb_001507_010 Hb_001507_010 Hb_000103_050--Hb_001507_010 Hb_010710_050 Hb_010710_050 Hb_000103_050--Hb_010710_050 Hb_008516_020 Hb_008516_020 Hb_000103_050--Hb_008516_020 Hb_148422_010 Hb_148422_010 Hb_000103_050--Hb_148422_010 Hb_084391_010 Hb_084391_010 Hb_000103_050--Hb_084391_010 Hb_013483_010--Hb_001507_010 Hb_013483_010--Hb_010710_050 Hb_001012_020 Hb_001012_020 Hb_013483_010--Hb_001012_020 Hb_145226_010 Hb_145226_010 Hb_013483_010--Hb_145226_010 Hb_099069_010 Hb_099069_010 Hb_013483_010--Hb_099069_010 Hb_001507_010--Hb_010710_050 Hb_178968_170 Hb_178968_170 Hb_001507_010--Hb_178968_170 Hb_000190_110 Hb_000190_110 Hb_001507_010--Hb_000190_110 Hb_001507_010--Hb_099069_010 Hb_115053_010 Hb_115053_010 Hb_010710_050--Hb_115053_010 Hb_000313_010 Hb_000313_010 Hb_010710_050--Hb_000313_010 Hb_001579_310 Hb_001579_310 Hb_010710_050--Hb_001579_310 Hb_008841_010 Hb_008841_010 Hb_010710_050--Hb_008841_010 Hb_000392_330 Hb_000392_330 Hb_008516_020--Hb_000392_330 Hb_003086_130 Hb_003086_130 Hb_008516_020--Hb_003086_130 Hb_004048_060 Hb_004048_060 Hb_008516_020--Hb_004048_060 Hb_091433_040 Hb_091433_040 Hb_008516_020--Hb_091433_040 Hb_001534_170 Hb_001534_170 Hb_008516_020--Hb_001534_170 Hb_000951_040 Hb_000951_040 Hb_008516_020--Hb_000951_040 Hb_183612_090 Hb_183612_090 Hb_148422_010--Hb_183612_090 Hb_012586_020 Hb_012586_020 Hb_148422_010--Hb_012586_020 Hb_003060_040 Hb_003060_040 Hb_148422_010--Hb_003060_040 Hb_004942_020 Hb_004942_020 Hb_148422_010--Hb_004942_020 Hb_001425_060 Hb_001425_060 Hb_148422_010--Hb_001425_060 Hb_091433_030 Hb_091433_030 Hb_148422_010--Hb_091433_030 Hb_011360_020 Hb_011360_020 Hb_084391_010--Hb_011360_020 Hb_001623_520 Hb_001623_520 Hb_084391_010--Hb_001623_520 Hb_004699_020 Hb_004699_020 Hb_084391_010--Hb_004699_020 Hb_003972_020 Hb_003972_020 Hb_084391_010--Hb_003972_020 Hb_084391_010--Hb_008516_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.490771
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.269703 0.847946 0.643475 0 0

CAGE analysis