Hb_013483_010

Information

Type -
Description -
Location Contig13483: 392-867
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013483_010 0.0 - - -
2 Hb_001507_010 0.1774617661 - - PREDICTED: xylose isomerase [Jatropha curcas]
3 Hb_000103_050 0.2055497287 - - hypothetical protein CICLE_v10006287mg [Citrus clementina]
4 Hb_010710_050 0.2344448742 - - -
5 Hb_001012_020 0.2662844274 transcription factor TF Family: M-type unnamed protein product [Coffea canephora]
6 Hb_145226_010 0.2858096424 - - PREDICTED: uncharacterized protein LOC100262861 [Vitis vinifera]
7 Hb_099069_010 0.2858778059 - - S-adenosyl-methionine-sterol-C- methyltransferase [Ricinus communis]
8 Hb_000190_110 0.2869715163 - - -
9 Hb_111648_010 0.314057512 rubber biosynthesis Gene Name: REF1 rubber elongation factor [Hevea brasiliensis]
10 Hb_001221_510 0.3156798546 - - Protein HVA22, putative [Ricinus communis]
11 Hb_000997_330 0.3169692967 - - hypothetical protein POPTR_0010s08940g [Populus trichocarpa]
12 Hb_003081_030 0.3178819163 - - PREDICTED: uncharacterized protein LOC101256381 [Solanum lycopersicum]
13 Hb_012395_200 0.3192696273 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000387_100 0.3205106719 - - -
15 Hb_000078_010 0.3262644123 - - hypothetical protein POPTR_0006s06510g, partial [Populus trichocarpa]
16 Hb_007532_040 0.3268799452 - - -
17 Hb_008841_010 0.3334776182 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
18 Hb_008516_020 0.3362739607 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
19 Hb_000951_040 0.338108914 transcription factor TF Family: M-type hypothetical protein JCGZ_09931 [Jatropha curcas]
20 Hb_002400_090 0.3392489402 - - -

Gene co-expression network

sample Hb_013483_010 Hb_013483_010 Hb_001507_010 Hb_001507_010 Hb_013483_010--Hb_001507_010 Hb_000103_050 Hb_000103_050 Hb_013483_010--Hb_000103_050 Hb_010710_050 Hb_010710_050 Hb_013483_010--Hb_010710_050 Hb_001012_020 Hb_001012_020 Hb_013483_010--Hb_001012_020 Hb_145226_010 Hb_145226_010 Hb_013483_010--Hb_145226_010 Hb_099069_010 Hb_099069_010 Hb_013483_010--Hb_099069_010 Hb_001507_010--Hb_000103_050 Hb_001507_010--Hb_010710_050 Hb_178968_170 Hb_178968_170 Hb_001507_010--Hb_178968_170 Hb_000190_110 Hb_000190_110 Hb_001507_010--Hb_000190_110 Hb_001507_010--Hb_099069_010 Hb_000103_050--Hb_010710_050 Hb_008516_020 Hb_008516_020 Hb_000103_050--Hb_008516_020 Hb_148422_010 Hb_148422_010 Hb_000103_050--Hb_148422_010 Hb_084391_010 Hb_084391_010 Hb_000103_050--Hb_084391_010 Hb_115053_010 Hb_115053_010 Hb_010710_050--Hb_115053_010 Hb_000313_010 Hb_000313_010 Hb_010710_050--Hb_000313_010 Hb_001579_310 Hb_001579_310 Hb_010710_050--Hb_001579_310 Hb_008841_010 Hb_008841_010 Hb_010710_050--Hb_008841_010 Hb_005935_010 Hb_005935_010 Hb_001012_020--Hb_005935_010 Hb_157568_010 Hb_157568_010 Hb_001012_020--Hb_157568_010 Hb_001221_510 Hb_001221_510 Hb_001012_020--Hb_001221_510 Hb_135403_010 Hb_135403_010 Hb_001012_020--Hb_135403_010 Hb_123202_010 Hb_123202_010 Hb_001012_020--Hb_123202_010 Hb_002671_080 Hb_002671_080 Hb_001012_020--Hb_002671_080 Hb_111648_010 Hb_111648_010 Hb_145226_010--Hb_111648_010 Hb_145226_010--Hb_099069_010 Hb_000041_070 Hb_000041_070 Hb_145226_010--Hb_000041_070 Hb_004206_030 Hb_004206_030 Hb_145226_010--Hb_004206_030 Hb_000078_010 Hb_000078_010 Hb_145226_010--Hb_000078_010 Hb_001514_180 Hb_001514_180 Hb_145226_010--Hb_001514_180 Hb_099069_010--Hb_111648_010 Hb_000157_040 Hb_000157_040 Hb_099069_010--Hb_000157_040 Hb_099069_010--Hb_000078_010 Hb_007810_030 Hb_007810_030 Hb_099069_010--Hb_007810_030 Hb_000270_410 Hb_000270_410 Hb_099069_010--Hb_000270_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.260943
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.205182 0.161169 0.256717 0 0

CAGE analysis