Hb_010710_050

Information

Type -
Description -
Location Contig10710: 30027-30560
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02256: 28934-29141
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010710_050 0.0 - - -
2 Hb_115053_010 0.1973586504 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
3 Hb_000313_010 0.1976869742 - - polyprotein [Citrus endogenous pararetrovirus]
4 Hb_001579_310 0.2132916122 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37320 [Jatropha curcas]
5 Hb_008841_010 0.2144538148 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
6 Hb_001507_010 0.2183304884 - - PREDICTED: xylose isomerase [Jatropha curcas]
7 Hb_013483_010 0.2344448742 - - -
8 Hb_000997_330 0.2486025861 - - hypothetical protein POPTR_0010s08940g [Populus trichocarpa]
9 Hb_012395_200 0.2496430461 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001296_030 0.2529218739 - - PREDICTED: uncharacterized protein LOC105638276 [Jatropha curcas]
11 Hb_099069_010 0.2600055384 - - S-adenosyl-methionine-sterol-C- methyltransferase [Ricinus communis]
12 Hb_001221_510 0.2601872062 - - Protein HVA22, putative [Ricinus communis]
13 Hb_116264_010 0.2615362862 - - hypothetical protein JCGZ_05585 [Jatropha curcas]
14 Hb_111648_010 0.2631220794 rubber biosynthesis Gene Name: REF1 rubber elongation factor [Hevea brasiliensis]
15 Hb_074590_010 0.2641506742 transcription factor TF Family: ERF ethylene-responsive element binding protein 2 [Hevea brasiliensis]
16 Hb_000103_050 0.266829787 - - hypothetical protein CICLE_v10006287mg [Citrus clementina]
17 Hb_002400_090 0.2672034155 - - -
18 Hb_000690_070 0.2701379353 - - -
19 Hb_001310_070 0.2704238481 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
20 Hb_143766_100 0.2705524415 - - PREDICTED: uncharacterized protein LOC105637800 [Jatropha curcas]

Gene co-expression network

sample Hb_010710_050 Hb_010710_050 Hb_115053_010 Hb_115053_010 Hb_010710_050--Hb_115053_010 Hb_000313_010 Hb_000313_010 Hb_010710_050--Hb_000313_010 Hb_001579_310 Hb_001579_310 Hb_010710_050--Hb_001579_310 Hb_008841_010 Hb_008841_010 Hb_010710_050--Hb_008841_010 Hb_001507_010 Hb_001507_010 Hb_010710_050--Hb_001507_010 Hb_013483_010 Hb_013483_010 Hb_010710_050--Hb_013483_010 Hb_115053_010--Hb_000313_010 Hb_010449_040 Hb_010449_040 Hb_115053_010--Hb_010449_040 Hb_021888_130 Hb_021888_130 Hb_115053_010--Hb_021888_130 Hb_076175_010 Hb_076175_010 Hb_115053_010--Hb_076175_010 Hb_115053_010--Hb_001579_310 Hb_001638_240 Hb_001638_240 Hb_000313_010--Hb_001638_240 Hb_001357_080 Hb_001357_080 Hb_000313_010--Hb_001357_080 Hb_002539_090 Hb_002539_090 Hb_000313_010--Hb_002539_090 Hb_000313_010--Hb_001579_310 Hb_000672_120 Hb_000672_120 Hb_000313_010--Hb_000672_120 Hb_007594_090 Hb_007594_090 Hb_000313_010--Hb_007594_090 Hb_001579_310--Hb_007594_090 Hb_003561_030 Hb_003561_030 Hb_001579_310--Hb_003561_030 Hb_002843_210 Hb_002843_210 Hb_001579_310--Hb_002843_210 Hb_001579_310--Hb_002539_090 Hb_012423_050 Hb_012423_050 Hb_001579_310--Hb_012423_050 Hb_001296_030 Hb_001296_030 Hb_008841_010--Hb_001296_030 Hb_002025_300 Hb_002025_300 Hb_008841_010--Hb_002025_300 Hb_042710_010 Hb_042710_010 Hb_008841_010--Hb_042710_010 Hb_008841_010--Hb_007594_090 Hb_008841_010--Hb_000672_120 Hb_000493_010 Hb_000493_010 Hb_008841_010--Hb_000493_010 Hb_001507_010--Hb_013483_010 Hb_000103_050 Hb_000103_050 Hb_001507_010--Hb_000103_050 Hb_178968_170 Hb_178968_170 Hb_001507_010--Hb_178968_170 Hb_000190_110 Hb_000190_110 Hb_001507_010--Hb_000190_110 Hb_099069_010 Hb_099069_010 Hb_001507_010--Hb_099069_010 Hb_013483_010--Hb_000103_050 Hb_001012_020 Hb_001012_020 Hb_013483_010--Hb_001012_020 Hb_145226_010 Hb_145226_010 Hb_013483_010--Hb_145226_010 Hb_013483_010--Hb_099069_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.54257 0.302866 2.90158
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.82533 2.29997 3.28762 0.266499 0

CAGE analysis