Hb_003972_020

Information

Type -
Description -
Location Contig3972: 20077-21024
Sequence    

Annotation

kegg
ID rcu:RCOM_1619950
description hypothetical protein
nr
ID XP_002512053.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9REB4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1619950 PE=4 SV=1
Gene Ontology
ID GO:0005737
description myb-like protein x-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003972_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_084391_010 0.2661718326 - - xylulose kinase, putative [Ricinus communis]
3 Hb_023813_010 0.2989202507 - - PREDICTED: uncharacterized protein LOC105162193 [Sesamum indicum]
4 Hb_009722_020 0.2989638173 - - -
5 Hb_000092_210 0.3010428981 - - -
6 Hb_007426_240 0.3087374885 - - -
7 Hb_008202_030 0.3110136198 - - hypothetical protein B456_002G115600 [Gossypium raimondii]
8 Hb_000529_120 0.3146480893 - - PREDICTED: uncharacterized protein LOC105641745 [Jatropha curcas]
9 Hb_000800_100 0.3151569596 - - hypothetical protein JCGZ_01543 [Jatropha curcas]
10 Hb_001623_520 0.3191636856 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
11 Hb_000103_050 0.3224883312 - - hypothetical protein CICLE_v10006287mg [Citrus clementina]
12 Hb_000173_300 0.3411663415 - - PREDICTED: uncharacterized protein LOC105631894 [Jatropha curcas]
13 Hb_011360_020 0.3415557837 - - -
14 Hb_026113_020 0.3461965929 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_006684_020 0.3477106858 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_000976_220 0.3530950216 - - PREDICTED: protein ALTERED XYLOGLUCAN 4-like [Jatropha curcas]
17 Hb_127120_010 0.3531218587 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
18 Hb_007407_030 0.3532210693 - - hypothetical protein JCGZ_23510 [Jatropha curcas]
19 Hb_011344_180 0.3615866628 - - hypothetical protein JCGZ_20759 [Jatropha curcas]
20 Hb_000573_030 0.3623357152 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]

Gene co-expression network

sample Hb_003972_020 Hb_003972_020 Hb_084391_010 Hb_084391_010 Hb_003972_020--Hb_084391_010 Hb_023813_010 Hb_023813_010 Hb_003972_020--Hb_023813_010 Hb_009722_020 Hb_009722_020 Hb_003972_020--Hb_009722_020 Hb_000092_210 Hb_000092_210 Hb_003972_020--Hb_000092_210 Hb_007426_240 Hb_007426_240 Hb_003972_020--Hb_007426_240 Hb_008202_030 Hb_008202_030 Hb_003972_020--Hb_008202_030 Hb_011360_020 Hb_011360_020 Hb_084391_010--Hb_011360_020 Hb_001623_520 Hb_001623_520 Hb_084391_010--Hb_001623_520 Hb_004699_020 Hb_004699_020 Hb_084391_010--Hb_004699_020 Hb_000103_050 Hb_000103_050 Hb_084391_010--Hb_000103_050 Hb_008516_020 Hb_008516_020 Hb_084391_010--Hb_008516_020 Hb_023813_010--Hb_009722_020 Hb_023813_010--Hb_000092_210 Hb_023813_010--Hb_007426_240 Hb_023813_010--Hb_008202_030 Hb_000529_120 Hb_000529_120 Hb_023813_010--Hb_000529_120 Hb_000800_100 Hb_000800_100 Hb_023813_010--Hb_000800_100 Hb_009722_020--Hb_000092_210 Hb_009722_020--Hb_008202_030 Hb_009722_020--Hb_007426_240 Hb_009722_020--Hb_000800_100 Hb_009722_020--Hb_000529_120 Hb_000092_210--Hb_007426_240 Hb_000092_210--Hb_000529_120 Hb_000092_210--Hb_008202_030 Hb_000173_300 Hb_000173_300 Hb_000092_210--Hb_000173_300 Hb_007426_240--Hb_000529_120 Hb_007426_240--Hb_000173_300 Hb_026113_020 Hb_026113_020 Hb_007426_240--Hb_026113_020 Hb_008202_030--Hb_000800_100 Hb_003621_010 Hb_003621_010 Hb_008202_030--Hb_003621_010 Hb_008202_030--Hb_007426_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.242112
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.191907 0.0873653 0 0

CAGE analysis