Hb_003906_180

Information

Type -
Description -
Location Contig3906: 88952-92011
Sequence    

Annotation

kegg
ID -
description -
nr
ID ACR35869.1
description unknown [Zea mays]
swissprot
ID -
description -
trembl
ID C4J3W9
description Uncharacterized protein OS=Zea mays PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003906_180 0.0 - - unknown [Zea mays]
2 Hb_001008_100 0.1056806104 - - JHL25H03.10 [Jatropha curcas]
3 Hb_000866_140 0.1177297158 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
4 Hb_003711_010 0.124176784 - - isopropylmalate synthase, putative [Ricinus communis]
5 Hb_000139_320 0.1277869067 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
6 Hb_008948_140 0.1301206664 - - PREDICTED: nuclear pore complex protein NUP205 [Jatropha curcas]
7 Hb_016734_080 0.1346228028 - - PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 [Jatropha curcas]
8 Hb_000661_120 0.1347285486 - - cap binding protein, putative [Ricinus communis]
9 Hb_000297_030 0.1369184897 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
10 Hb_000684_510 0.137375056 - - run and tbc1 domain containing 3, plant, putative [Ricinus communis]
11 Hb_002014_010 0.1378492877 - - Uncharacterized protein isoform 1 [Theobroma cacao]
12 Hb_005730_010 0.1383766885 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
13 Hb_002812_010 0.1393853118 - - PREDICTED: chitin elicitor receptor kinase 1 isoform X1 [Jatropha curcas]
14 Hb_026980_020 0.1396928274 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
15 Hb_000513_090 0.1411773337 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
16 Hb_000008_090 0.1420102204 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
17 Hb_001723_010 0.1427964631 - - PREDICTED: E3 ubiquitin-protein ligase UPL6 [Jatropha curcas]
18 Hb_001300_280 0.1431455247 - - PREDICTED: mitochondrial substrate carrier family protein ucpB [Jatropha curcas]
19 Hb_012092_050 0.1434072456 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
20 Hb_000402_150 0.1449760828 - - PREDICTED: uncharacterized protein LOC105644650 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003906_180 Hb_003906_180 Hb_001008_100 Hb_001008_100 Hb_003906_180--Hb_001008_100 Hb_000866_140 Hb_000866_140 Hb_003906_180--Hb_000866_140 Hb_003711_010 Hb_003711_010 Hb_003906_180--Hb_003711_010 Hb_000139_320 Hb_000139_320 Hb_003906_180--Hb_000139_320 Hb_008948_140 Hb_008948_140 Hb_003906_180--Hb_008948_140 Hb_016734_080 Hb_016734_080 Hb_003906_180--Hb_016734_080 Hb_000856_300 Hb_000856_300 Hb_001008_100--Hb_000856_300 Hb_000926_150 Hb_000926_150 Hb_001008_100--Hb_000926_150 Hb_001008_100--Hb_008948_140 Hb_000661_120 Hb_000661_120 Hb_001008_100--Hb_000661_120 Hb_003633_090 Hb_003633_090 Hb_001008_100--Hb_003633_090 Hb_089140_040 Hb_089140_040 Hb_001008_100--Hb_089140_040 Hb_003428_090 Hb_003428_090 Hb_000866_140--Hb_003428_090 Hb_003018_030 Hb_003018_030 Hb_000866_140--Hb_003018_030 Hb_000890_160 Hb_000890_160 Hb_000866_140--Hb_000890_160 Hb_000156_090 Hb_000156_090 Hb_000866_140--Hb_000156_090 Hb_008725_050 Hb_008725_050 Hb_000866_140--Hb_008725_050 Hb_002107_100 Hb_002107_100 Hb_000866_140--Hb_002107_100 Hb_001723_010 Hb_001723_010 Hb_003711_010--Hb_001723_010 Hb_000340_030 Hb_000340_030 Hb_003711_010--Hb_000340_030 Hb_000684_510 Hb_000684_510 Hb_003711_010--Hb_000684_510 Hb_000373_170 Hb_000373_170 Hb_003711_010--Hb_000373_170 Hb_003711_010--Hb_000139_320 Hb_003711_010--Hb_000661_120 Hb_000139_320--Hb_000340_030 Hb_000139_320--Hb_001723_010 Hb_026980_020 Hb_026980_020 Hb_000139_320--Hb_026980_020 Hb_102438_030 Hb_102438_030 Hb_000139_320--Hb_102438_030 Hb_000174_150 Hb_000174_150 Hb_000139_320--Hb_000174_150 Hb_000479_240 Hb_000479_240 Hb_008948_140--Hb_000479_240 Hb_008948_140--Hb_000856_300 Hb_001341_160 Hb_001341_160 Hb_008948_140--Hb_001341_160 Hb_000862_040 Hb_000862_040 Hb_008948_140--Hb_000862_040 Hb_008948_140--Hb_001723_010 Hb_008948_140--Hb_000926_150 Hb_001221_110 Hb_001221_110 Hb_016734_080--Hb_001221_110 Hb_000359_040 Hb_000359_040 Hb_016734_080--Hb_000359_040 Hb_001357_310 Hb_001357_310 Hb_016734_080--Hb_001357_310 Hb_010775_030 Hb_010775_030 Hb_016734_080--Hb_010775_030 Hb_004096_180 Hb_004096_180 Hb_016734_080--Hb_004096_180 Hb_002232_480 Hb_002232_480 Hb_016734_080--Hb_002232_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.194179 1.65249 1.59841 1.22525 1.1115 0.807614
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.668016 0.831809 0.400821 1.41117 0.534338

CAGE analysis