Hb_003477_010

Information

Type -
Description -
Location Contig3477: 17156-22287
Sequence    

Annotation

kegg
ID rcu:RCOM_0770010
description GTP binding protein, putative
nr
ID KDP26074.1
description hypothetical protein JCGZ_21107 [Jatropha curcas]
swissprot
ID Q8L607
description Short integuments 2, mitochondrial OS=Arabidopsis thaliana GN=SIN2 PE=1 SV=1
trembl
ID A0A067K2P9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21107 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003477_010 0.0 - - hypothetical protein JCGZ_21107 [Jatropha curcas]
2 Hb_000261_180 0.1142791686 - - Tetratricopeptide repeat-like superfamily protein, putative isoform 1 [Theobroma cacao]
3 Hb_005565_040 0.1312940284 - - conserved hypothetical protein [Ricinus communis]
4 Hb_173178_020 0.1361229243 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X1 [Jatropha curcas]
5 Hb_023001_050 0.1419811015 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
6 Hb_001769_080 0.1426011765 - - hypothetical protein SORBIDRAFT_10g023200 [Sorghum bicolor]
7 Hb_003995_010 0.1434197047 - - -
8 Hb_140291_010 0.1496021523 - - hypothetical protein JCGZ_17222 [Jatropha curcas]
9 Hb_001158_220 0.1507697341 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
10 Hb_011257_010 0.1517822685 - - -
11 Hb_172141_010 0.156390484 - - PREDICTED: uncharacterized protein LOC105641033 [Jatropha curcas]
12 Hb_000866_030 0.1569799665 - - hypothetical protein RCOM_1615820 [Ricinus communis]
13 Hb_000548_050 0.1572217993 - - hypothetical protein POPTR_0008s12570g [Populus trichocarpa]
14 Hb_003050_370 0.1572840439 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
15 Hb_003502_080 0.1572980776 - - vacuolar protein sorting, putative [Ricinus communis]
16 Hb_061908_010 0.1573261283 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
17 Hb_003656_140 0.1578399147 - - PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Jatropha curcas]
18 Hb_000032_620 0.1585283646 - - hypothetical protein RCOM_1311830 [Ricinus communis]
19 Hb_005016_170 0.1591860456 - - conserved hypothetical protein [Ricinus communis]
20 Hb_017259_010 0.159477716 - - -

Gene co-expression network

sample Hb_003477_010 Hb_003477_010 Hb_000261_180 Hb_000261_180 Hb_003477_010--Hb_000261_180 Hb_005565_040 Hb_005565_040 Hb_003477_010--Hb_005565_040 Hb_173178_020 Hb_173178_020 Hb_003477_010--Hb_173178_020 Hb_023001_050 Hb_023001_050 Hb_003477_010--Hb_023001_050 Hb_001769_080 Hb_001769_080 Hb_003477_010--Hb_001769_080 Hb_003995_010 Hb_003995_010 Hb_003477_010--Hb_003995_010 Hb_001930_050 Hb_001930_050 Hb_000261_180--Hb_001930_050 Hb_000069_160 Hb_000069_160 Hb_000261_180--Hb_000069_160 Hb_002217_310 Hb_002217_310 Hb_000261_180--Hb_002217_310 Hb_033642_110 Hb_033642_110 Hb_000261_180--Hb_033642_110 Hb_012753_130 Hb_012753_130 Hb_000261_180--Hb_012753_130 Hb_012114_060 Hb_012114_060 Hb_005565_040--Hb_012114_060 Hb_000092_100 Hb_000092_100 Hb_005565_040--Hb_000092_100 Hb_001105_010 Hb_001105_010 Hb_005565_040--Hb_001105_010 Hb_029920_050 Hb_029920_050 Hb_005565_040--Hb_029920_050 Hb_000548_050 Hb_000548_050 Hb_005565_040--Hb_000548_050 Hb_011942_080 Hb_011942_080 Hb_005565_040--Hb_011942_080 Hb_001616_090 Hb_001616_090 Hb_173178_020--Hb_001616_090 Hb_031091_010 Hb_031091_010 Hb_173178_020--Hb_031091_010 Hb_003716_020 Hb_003716_020 Hb_173178_020--Hb_003716_020 Hb_000352_090 Hb_000352_090 Hb_173178_020--Hb_000352_090 Hb_009411_020 Hb_009411_020 Hb_173178_020--Hb_009411_020 Hb_008714_020 Hb_008714_020 Hb_173178_020--Hb_008714_020 Hb_003502_080 Hb_003502_080 Hb_023001_050--Hb_003502_080 Hb_000349_060 Hb_000349_060 Hb_023001_050--Hb_000349_060 Hb_105386_010 Hb_105386_010 Hb_023001_050--Hb_105386_010 Hb_000465_430 Hb_000465_430 Hb_023001_050--Hb_000465_430 Hb_005016_170 Hb_005016_170 Hb_023001_050--Hb_005016_170 Hb_012092_010 Hb_012092_010 Hb_023001_050--Hb_012092_010 Hb_001025_110 Hb_001025_110 Hb_001769_080--Hb_001025_110 Hb_002447_040 Hb_002447_040 Hb_001769_080--Hb_002447_040 Hb_158062_010 Hb_158062_010 Hb_001769_080--Hb_158062_010 Hb_001454_400 Hb_001454_400 Hb_001769_080--Hb_001454_400 Hb_140291_010 Hb_140291_010 Hb_001769_080--Hb_140291_010 Hb_000270_630 Hb_000270_630 Hb_001769_080--Hb_000270_630 Hb_003995_010--Hb_173178_020 Hb_057490_010 Hb_057490_010 Hb_003995_010--Hb_057490_010 Hb_003995_010--Hb_003716_020 Hb_004218_070 Hb_004218_070 Hb_003995_010--Hb_004218_070 Hb_175612_010 Hb_175612_010 Hb_003995_010--Hb_175612_010 Hb_000213_070 Hb_000213_070 Hb_003995_010--Hb_000213_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.16594 0.861655 0.770677 1.24551 1.13061 2.55553
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.51313 1.00173 0.559287 0.942057 0

CAGE analysis