Hb_033642_110

Information

Type -
Description -
Location Contig33642: 119888-125740
Sequence    

Annotation

kegg
ID pop:POPTR_0005s11350g
description hypothetical protein
nr
ID XP_012066126.1
description PREDICTED: MLO-like protein 4 [Jatropha curcas]
swissprot
ID O23693
description MLO-like protein 4 OS=Arabidopsis thaliana GN=MLO4 PE=2 SV=2
trembl
ID A0A067LE99
description MLO-like protein OS=Jatropha curcas GN=MLO PE=3 SV=1
Gene Ontology
ID GO:0016021
description mlo-like protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35260: 118644-118912 , PASA_asmbl_35261: 120176-120345 , PASA_asmbl_35262: 120684-121352 , PASA_asmbl_35263: 122760-125661
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033642_110 0.0 - - PREDICTED: MLO-like protein 4 [Jatropha curcas]
2 Hb_003589_090 0.1046567598 - - PREDICTED: potassium transporter 2 [Jatropha curcas]
3 Hb_002217_310 0.1134987406 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
4 Hb_001090_040 0.1161461557 - - Transmembrane protein 50A, putative [Ricinus communis]
5 Hb_021409_020 0.1188662306 - - PREDICTED: protein yippee-like At4g27745 [Malus domestica]
6 Hb_000849_070 0.1189064967 - - PREDICTED: uncharacterized protein LOC105644190 [Jatropha curcas]
7 Hb_018790_030 0.1196807577 - - PREDICTED: cyclic phosphodiesterase-like [Jatropha curcas]
8 Hb_001584_080 0.1207808916 - - hypothetical protein JCGZ_23206 [Jatropha curcas]
9 Hb_005016_170 0.121738404 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007617_050 0.122368462 - - Isoflavone reductase, putative [Ricinus communis]
11 Hb_003847_080 0.1255685562 - - PREDICTED: uncharacterized protein LOC105647792 isoform X3 [Jatropha curcas]
12 Hb_003502_080 0.126008945 - - vacuolar protein sorting, putative [Ricinus communis]
13 Hb_000069_160 0.1270026789 - - -
14 Hb_001124_210 0.1271497679 - - conserved hypothetical protein [Ricinus communis]
15 Hb_010180_010 0.1273123835 - - PREDICTED: uncharacterized protein LOC105631104 [Jatropha curcas]
16 Hb_000500_090 0.1288461247 - - nucleoside diphosphate kinase 2 [Hevea brasiliensis]
17 Hb_002078_150 0.1298237254 - - protein with unknown function [Ricinus communis]
18 Hb_000640_240 0.1313473964 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
19 Hb_003058_130 0.1317482034 - - PREDICTED: protein N-lysine methyltransferase METTL21A isoform X1 [Jatropha curcas]
20 Hb_002671_100 0.1320183985 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Jatropha curcas]

Gene co-expression network

sample Hb_033642_110 Hb_033642_110 Hb_003589_090 Hb_003589_090 Hb_033642_110--Hb_003589_090 Hb_002217_310 Hb_002217_310 Hb_033642_110--Hb_002217_310 Hb_001090_040 Hb_001090_040 Hb_033642_110--Hb_001090_040 Hb_021409_020 Hb_021409_020 Hb_033642_110--Hb_021409_020 Hb_000849_070 Hb_000849_070 Hb_033642_110--Hb_000849_070 Hb_018790_030 Hb_018790_030 Hb_033642_110--Hb_018790_030 Hb_009838_100 Hb_009838_100 Hb_003589_090--Hb_009838_100 Hb_003589_090--Hb_021409_020 Hb_000331_210 Hb_000331_210 Hb_003589_090--Hb_000331_210 Hb_145314_010 Hb_145314_010 Hb_003589_090--Hb_145314_010 Hb_010172_080 Hb_010172_080 Hb_003589_090--Hb_010172_080 Hb_000069_160 Hb_000069_160 Hb_002217_310--Hb_000069_160 Hb_141131_010 Hb_141131_010 Hb_002217_310--Hb_141131_010 Hb_002217_310--Hb_000849_070 Hb_001124_210 Hb_001124_210 Hb_002217_310--Hb_001124_210 Hb_002217_310--Hb_021409_020 Hb_003847_080 Hb_003847_080 Hb_002217_310--Hb_003847_080 Hb_001828_190 Hb_001828_190 Hb_001090_040--Hb_001828_190 Hb_010655_010 Hb_010655_010 Hb_001090_040--Hb_010655_010 Hb_000960_060 Hb_000960_060 Hb_001090_040--Hb_000960_060 Hb_001935_130 Hb_001935_130 Hb_001090_040--Hb_001935_130 Hb_000329_030 Hb_000329_030 Hb_001090_040--Hb_000329_030 Hb_000331_450 Hb_000331_450 Hb_001090_040--Hb_000331_450 Hb_000229_040 Hb_000229_040 Hb_021409_020--Hb_000229_040 Hb_002811_360 Hb_002811_360 Hb_021409_020--Hb_002811_360 Hb_003502_080 Hb_003502_080 Hb_021409_020--Hb_003502_080 Hb_000045_090 Hb_000045_090 Hb_021409_020--Hb_000045_090 Hb_003195_060 Hb_003195_060 Hb_021409_020--Hb_003195_060 Hb_000849_070--Hb_000069_160 Hb_050455_010 Hb_050455_010 Hb_000849_070--Hb_050455_010 Hb_000849_070--Hb_001124_210 Hb_000849_070--Hb_003847_080 Hb_002400_070 Hb_002400_070 Hb_000849_070--Hb_002400_070 Hb_003656_130 Hb_003656_130 Hb_018790_030--Hb_003656_130 Hb_007059_010 Hb_007059_010 Hb_018790_030--Hb_007059_010 Hb_002671_100 Hb_002671_100 Hb_018790_030--Hb_002671_100 Hb_000933_090 Hb_000933_090 Hb_018790_030--Hb_000933_090 Hb_003090_080 Hb_003090_080 Hb_018790_030--Hb_003090_080 Hb_002149_020 Hb_002149_020 Hb_018790_030--Hb_002149_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.73963 1.21411 1.48372 5.82664 5.59587 6.11199
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.89591 5.18383 3.29978 3.92861 0.520058

CAGE analysis