Hb_002641_070

Information

Type -
Description -
Location Contig2641: 116061-116708
Sequence    

Annotation

kegg
ID rcu:RCOM_1000870
description transcription factor, putative
nr
ID XP_012084104.1
description PREDICTED: transcription factor bHLH147-like [Jatropha curcas]
swissprot
ID Q9LSN7
description Transcription factor bHLH147 OS=Arabidopsis thaliana GN=BHLH147 PE=1 SV=1
trembl
ID A0A067K6P3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19020 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor bhlh148-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27663: 115653-117349
cDNA
(Sanger)
(ID:Location)		 014_K16.ab1: 116519-117347 , 048_I21.ab1: 116275-117347

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002641_070 0.0 - - PREDICTED: transcription factor bHLH147-like [Jatropha curcas]
2 Hb_005306_190 0.12973667 - - Mitochondrial import inner membrane translocase subunit tim23, putative [Ricinus communis]
3 Hb_002813_040 0.1444491682 - - PREDICTED: PRA1 family protein G2 [Jatropha curcas]
4 Hb_003581_070 0.1445464027 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Malus domestica]
5 Hb_000210_230 0.1469514035 - - PREDICTED: uncharacterized protein LOC105635819 [Jatropha curcas]
6 Hb_001247_120 0.1488535295 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 3 [Jatropha curcas]
7 Hb_000178_130 0.1504556142 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
8 Hb_000120_330 0.1535354326 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005784_040 0.154069577 - - PREDICTED: uncharacterized protein LOC105645160 isoform X1 [Jatropha curcas]
10 Hb_000342_060 0.1545769541 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial-like isoform X1 [Nicotiana sylvestris]
11 Hb_074715_010 0.1555777633 - - PREDICTED: disease resistance protein RPS6-like isoform X2 [Jatropha curcas]
12 Hb_002961_060 0.1567543847 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 [Populus euphratica]
13 Hb_000430_020 0.1579320468 - - -
14 Hb_000264_360 0.1600070547 - - hypothetical protein JCGZ_21443 [Jatropha curcas]
15 Hb_011173_040 0.160538785 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Populus euphratica]
16 Hb_001856_230 0.161532099 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
17 Hb_003389_040 0.161692082 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
18 Hb_000357_110 0.1618056459 - - PREDICTED: uncharacterized protein LOC105643970 isoform X2 [Jatropha curcas]
19 Hb_011512_080 0.1618721846 - - hypothetical protein JCGZ_06424 [Jatropha curcas]
20 Hb_001817_160 0.1635566253 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002641_070 Hb_002641_070 Hb_005306_190 Hb_005306_190 Hb_002641_070--Hb_005306_190 Hb_002813_040 Hb_002813_040 Hb_002641_070--Hb_002813_040 Hb_003581_070 Hb_003581_070 Hb_002641_070--Hb_003581_070 Hb_000210_230 Hb_000210_230 Hb_002641_070--Hb_000210_230 Hb_001247_120 Hb_001247_120 Hb_002641_070--Hb_001247_120 Hb_000178_130 Hb_000178_130 Hb_002641_070--Hb_000178_130 Hb_000357_110 Hb_000357_110 Hb_005306_190--Hb_000357_110 Hb_095296_010 Hb_095296_010 Hb_005306_190--Hb_095296_010 Hb_005116_060 Hb_005116_060 Hb_005306_190--Hb_005116_060 Hb_007943_050 Hb_007943_050 Hb_005306_190--Hb_007943_050 Hb_005306_190--Hb_000178_130 Hb_000179_070 Hb_000179_070 Hb_005306_190--Hb_000179_070 Hb_001488_070 Hb_001488_070 Hb_002813_040--Hb_001488_070 Hb_002813_040--Hb_003581_070 Hb_029866_090 Hb_029866_090 Hb_002813_040--Hb_029866_090 Hb_031527_040 Hb_031527_040 Hb_002813_040--Hb_031527_040 Hb_002256_030 Hb_002256_030 Hb_002813_040--Hb_002256_030 Hb_020956_020 Hb_020956_020 Hb_002813_040--Hb_020956_020 Hb_003052_140 Hb_003052_140 Hb_003581_070--Hb_003052_140 Hb_004228_030 Hb_004228_030 Hb_003581_070--Hb_004228_030 Hb_003581_070--Hb_002256_030 Hb_000125_170 Hb_000125_170 Hb_003581_070--Hb_000125_170 Hb_003371_150 Hb_003371_150 Hb_003581_070--Hb_003371_150 Hb_001195_600 Hb_001195_600 Hb_000210_230--Hb_001195_600 Hb_000210_230--Hb_002813_040 Hb_001246_110 Hb_001246_110 Hb_000210_230--Hb_001246_110 Hb_000164_020 Hb_000164_020 Hb_000210_230--Hb_000164_020 Hb_000210_230--Hb_003581_070 Hb_001856_230 Hb_001856_230 Hb_000210_230--Hb_001856_230 Hb_005551_060 Hb_005551_060 Hb_001247_120--Hb_005551_060 Hb_001860_020 Hb_001860_020 Hb_001247_120--Hb_001860_020 Hb_001348_150 Hb_001348_150 Hb_001247_120--Hb_001348_150 Hb_001864_060 Hb_001864_060 Hb_001247_120--Hb_001864_060 Hb_000025_330 Hb_000025_330 Hb_001247_120--Hb_000025_330 Hb_000672_030 Hb_000672_030 Hb_001247_120--Hb_000672_030 Hb_000430_020 Hb_000430_020 Hb_000178_130--Hb_000430_020 Hb_004994_140 Hb_004994_140 Hb_000178_130--Hb_004994_140 Hb_000417_040 Hb_000417_040 Hb_000178_130--Hb_000417_040 Hb_003389_040 Hb_003389_040 Hb_000178_130--Hb_003389_040 Hb_001123_060 Hb_001123_060 Hb_000178_130--Hb_001123_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.536 102.877 14.3822 83.9007 44.3958 49.4055
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.0485 106.176 42.5024 20.3033 18.4677

CAGE analysis