Hb_002382_030

Information

Type -
Description -
Location Contig2382: 76029-83605
Sequence    

Annotation

kegg
ID mdm:103455762
description 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2-like
nr
ID XP_008393573.1
description PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2-like isoform X2 [Malus domestica]
swissprot
ID -
description -
trembl
ID Q8L857
description 3-beta-hydroxysteroid dehydrogenase OS=Arabidopsis thaliana GN=At2g26260 PE=2 SV=1
Gene Ontology
ID GO:0016491
description 3beta-hydroxysteroid-dehydrogenase decarboxylase isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002382_030 0.0 - - PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2-like isoform X2 [Malus domestica]
2 Hb_002588_040 0.2544323556 - - Pathogenesis-related protein 1 [Theobroma cacao]
3 Hb_000249_120 0.2750017833 - - PREDICTED: uncharacterized protein LOC104613364 [Nelumbo nucifera]
4 Hb_001146_060 0.275400561 transcription factor TF Family: bHLH lMYC5 [Hevea brasiliensis]
5 Hb_001214_080 0.2761890781 - - PREDICTED: transcription factor HBP-1b(c38)-like [Jatropha curcas]
6 Hb_012754_030 0.2772378847 - - PREDICTED: uncharacterized protein LOC105633150 isoform X1 [Jatropha curcas]
7 Hb_002067_140 0.288466817 - - -
8 Hb_000375_340 0.2953065217 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Populus euphratica]
9 Hb_000130_230 0.2969019319 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF098-like [Jatropha curcas]
10 Hb_010589_050 0.2990877856 - - -
11 Hb_011016_010 0.3001951315 - - PREDICTED: auxin response factor 2-like [Jatropha curcas]
12 Hb_003398_140 0.3024083183 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
13 Hb_000352_180 0.3027548156 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001767_050 0.3047055253 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000563_260 0.304707094 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
16 Hb_148850_010 0.3047480336 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
17 Hb_003891_080 0.3061697199 - - hypothetical protein JCGZ_16710 [Jatropha curcas]
18 Hb_001348_230 0.3073056403 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
19 Hb_000352_160 0.3116835569 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003847_020 0.3123491195 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002382_030 Hb_002382_030 Hb_002588_040 Hb_002588_040 Hb_002382_030--Hb_002588_040 Hb_000249_120 Hb_000249_120 Hb_002382_030--Hb_000249_120 Hb_001146_060 Hb_001146_060 Hb_002382_030--Hb_001146_060 Hb_001214_080 Hb_001214_080 Hb_002382_030--Hb_001214_080 Hb_012754_030 Hb_012754_030 Hb_002382_030--Hb_012754_030 Hb_002067_140 Hb_002067_140 Hb_002382_030--Hb_002067_140 Hb_002588_040--Hb_001146_060 Hb_001348_230 Hb_001348_230 Hb_002588_040--Hb_001348_230 Hb_000352_160 Hb_000352_160 Hb_002588_040--Hb_000352_160 Hb_001369_210 Hb_001369_210 Hb_002588_040--Hb_001369_210 Hb_000563_260 Hb_000563_260 Hb_002588_040--Hb_000563_260 Hb_001767_050 Hb_001767_050 Hb_002588_040--Hb_001767_050 Hb_167711_040 Hb_167711_040 Hb_000249_120--Hb_167711_040 Hb_000756_020 Hb_000756_020 Hb_000249_120--Hb_000756_020 Hb_005072_010 Hb_005072_010 Hb_000249_120--Hb_005072_010 Hb_000068_030 Hb_000068_030 Hb_000249_120--Hb_000068_030 Hb_003786_090 Hb_003786_090 Hb_000249_120--Hb_003786_090 Hb_163268_010 Hb_163268_010 Hb_000249_120--Hb_163268_010 Hb_001146_060--Hb_001369_210 Hb_001146_060--Hb_001348_230 Hb_001146_060--Hb_000352_160 Hb_001146_060--Hb_000563_260 Hb_001146_060--Hb_001767_050 Hb_001247_330 Hb_001247_330 Hb_001214_080--Hb_001247_330 Hb_002150_050 Hb_002150_050 Hb_001214_080--Hb_002150_050 Hb_002784_150 Hb_002784_150 Hb_001214_080--Hb_002784_150 Hb_000033_040 Hb_000033_040 Hb_001214_080--Hb_000033_040 Hb_001214_080--Hb_001767_050 Hb_000962_080 Hb_000962_080 Hb_001214_080--Hb_000962_080 Hb_000563_310 Hb_000563_310 Hb_012754_030--Hb_000563_310 Hb_003398_140 Hb_003398_140 Hb_012754_030--Hb_003398_140 Hb_000340_440 Hb_000340_440 Hb_012754_030--Hb_000340_440 Hb_028271_010 Hb_028271_010 Hb_012754_030--Hb_028271_010 Hb_009680_040 Hb_009680_040 Hb_012754_030--Hb_009680_040 Hb_026687_010 Hb_026687_010 Hb_012754_030--Hb_026687_010 Hb_001776_170 Hb_001776_170 Hb_002067_140--Hb_001776_170 Hb_001369_600 Hb_001369_600 Hb_002067_140--Hb_001369_600 Hb_012053_050 Hb_012053_050 Hb_002067_140--Hb_012053_050 Hb_001369_450 Hb_001369_450 Hb_002067_140--Hb_001369_450 Hb_001488_370 Hb_001488_370 Hb_002067_140--Hb_001488_370 Hb_000094_110 Hb_000094_110 Hb_002067_140--Hb_000094_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.168932 0.0899012 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 1.25826 0.50306 0.202277 0

CAGE analysis