Hb_002073_170

Information

Type -
Description -
Location Contig2073: 106597-108414
Sequence    

Annotation

kegg
ID pop:POPTR_0004s07980g
description POPTRDRAFT_556027; leucine-rich repeat transmembrane protein kinase
nr
ID XP_012091998.1
description PREDICTED: probable inactive receptor kinase At1g27190 [Jatropha curcas]
swissprot
ID O04567
description Probable inactive receptor kinase At1g27190 OS=Arabidopsis thaliana GN=At1g27190 PE=1 SV=1
trembl
ID A0A067JEU5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21739 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable inactive receptor kinase at1g27190

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21380: 106541-108719
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002073_170 0.0 - - PREDICTED: probable inactive receptor kinase At1g27190 [Jatropha curcas]
2 Hb_006788_110 0.1063116889 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
3 Hb_000735_020 0.1089788063 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
4 Hb_004696_010 0.1105639152 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
5 Hb_000303_060 0.1161329703 - - o-methyltransferase, putative [Ricinus communis]
6 Hb_003125_210 0.1163393737 - - Phospholipase C 4 precursor, putative [Ricinus communis]
7 Hb_001085_190 0.1179758982 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
8 Hb_000417_210 0.1184232457 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_002272_120 0.1217421525 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
10 Hb_012518_080 0.1243889925 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]
11 Hb_064546_010 0.1261641673 - - PREDICTED: peroxidase 3 [Jatropha curcas]
12 Hb_004804_010 0.1284878683 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
13 Hb_003376_140 0.1296279094 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]
14 Hb_009113_080 0.1296703766 - - PREDICTED: deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog [Jatropha curcas]
15 Hb_033312_070 0.1296811021 - - hypothetical protein POPTR_0017s02960g [Populus trichocarpa]
16 Hb_027506_030 0.1307792589 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
17 Hb_011918_070 0.1310040744 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
18 Hb_006002_050 0.1318645957 - - PREDICTED: uncharacterized protein LOC105638083 [Jatropha curcas]
19 Hb_001541_130 0.1338062087 - - GDSL esterase/lipase [Morus notabilis]
20 Hb_116647_010 0.1340692409 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002073_170 Hb_002073_170 Hb_006788_110 Hb_006788_110 Hb_002073_170--Hb_006788_110 Hb_000735_020 Hb_000735_020 Hb_002073_170--Hb_000735_020 Hb_004696_010 Hb_004696_010 Hb_002073_170--Hb_004696_010 Hb_000303_060 Hb_000303_060 Hb_002073_170--Hb_000303_060 Hb_003125_210 Hb_003125_210 Hb_002073_170--Hb_003125_210 Hb_001085_190 Hb_001085_190 Hb_002073_170--Hb_001085_190 Hb_033312_070 Hb_033312_070 Hb_006788_110--Hb_033312_070 Hb_003376_140 Hb_003376_140 Hb_006788_110--Hb_003376_140 Hb_006788_110--Hb_000735_020 Hb_004531_160 Hb_004531_160 Hb_006788_110--Hb_004531_160 Hb_000984_130 Hb_000984_130 Hb_006788_110--Hb_000984_130 Hb_011918_070 Hb_011918_070 Hb_006788_110--Hb_011918_070 Hb_000735_020--Hb_001085_190 Hb_012518_080 Hb_012518_080 Hb_000735_020--Hb_012518_080 Hb_000735_020--Hb_011918_070 Hb_000735_020--Hb_033312_070 Hb_002292_080 Hb_002292_080 Hb_000735_020--Hb_002292_080 Hb_004696_010--Hb_011918_070 Hb_003580_050 Hb_003580_050 Hb_004696_010--Hb_003580_050 Hb_028008_040 Hb_028008_040 Hb_004696_010--Hb_028008_040 Hb_003835_080 Hb_003835_080 Hb_004696_010--Hb_003835_080 Hb_001541_130 Hb_001541_130 Hb_004696_010--Hb_001541_130 Hb_001159_230 Hb_001159_230 Hb_004696_010--Hb_001159_230 Hb_027506_030 Hb_027506_030 Hb_000303_060--Hb_027506_030 Hb_085962_010 Hb_085962_010 Hb_000303_060--Hb_085962_010 Hb_001396_030 Hb_001396_030 Hb_000303_060--Hb_001396_030 Hb_010264_020 Hb_010264_020 Hb_000303_060--Hb_010264_020 Hb_009767_060 Hb_009767_060 Hb_000303_060--Hb_009767_060 Hb_004804_010 Hb_004804_010 Hb_000303_060--Hb_004804_010 Hb_009113_080 Hb_009113_080 Hb_003125_210--Hb_009113_080 Hb_003125_210--Hb_004696_010 Hb_002815_020 Hb_002815_020 Hb_003125_210--Hb_002815_020 Hb_003086_030 Hb_003086_030 Hb_003125_210--Hb_003086_030 Hb_001951_080 Hb_001951_080 Hb_003125_210--Hb_001951_080 Hb_010222_040 Hb_010222_040 Hb_003125_210--Hb_010222_040 Hb_001085_190--Hb_011918_070 Hb_001085_190--Hb_009113_080 Hb_001085_190--Hb_012518_080 Hb_000005_360 Hb_000005_360 Hb_001085_190--Hb_000005_360 Hb_003606_050 Hb_003606_050 Hb_001085_190--Hb_003606_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.214243 1.59562 7.9998 18.7248 0.0634459 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.175717 0.138254 0.597621 3.38991 10.1127

CAGE analysis