Hb_002066_070

Information

Type -
Description -
Location Contig2066: 98410-102728
Sequence    

Annotation

kegg
ID pop:POPTR_0019s09220g
description peptide chain release factor family protein
nr
ID XP_012068427.1
description PREDICTED: uncharacterized protein LOC105631043 [Jatropha curcas]
swissprot
ID A7ZE19
description Peptide chain release factor 2 OS=Campylobacter concisus (strain 13826) GN=prfB PE=3 SV=1
trembl
ID B9N1R9
description Peptide chain release factor family protein OS=Populus trichocarpa GN=POPTR_0019s09220g PE=4 SV=1
Gene Ontology
ID GO:0009507
description class i peptide chain release factor isoform partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21275: 102310-102634
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002066_070 0.0 - - PREDICTED: uncharacterized protein LOC105631043 [Jatropha curcas]
2 Hb_001564_130 0.0899463558 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_004787_060 0.0921052011 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
4 Hb_005322_040 0.0968958677 - - 60S ribosomal protein L9, putative [Ricinus communis]
5 Hb_001329_290 0.1065864683 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
6 Hb_000444_080 0.1073591793 - - hypothetical protein POPTR_0019s10500g [Populus trichocarpa]
7 Hb_004449_170 0.1114288111 - - PREDICTED: uncharacterized protein LOC105631285 isoform X1 [Jatropha curcas]
8 Hb_001348_070 0.1124038388 - - Uncharacterized protein isoform 1 [Theobroma cacao]
9 Hb_000009_530 0.1134152709 - - PREDICTED: uncharacterized protein LOC105639628 [Jatropha curcas]
10 Hb_007154_020 0.1135448765 - - -
11 Hb_001504_020 0.11378686 - - 40S ribosomal protein S12A [Hevea brasiliensis]
12 Hb_013405_090 0.1142196315 - - PREDICTED: uncharacterized protein LOC105648433 isoform X1 [Jatropha curcas]
13 Hb_000116_310 0.1148674505 - - 50S robosomal protein L11, putative [Ricinus communis]
14 Hb_021419_020 0.1155249237 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
15 Hb_010921_010 0.1165490216 - - Small nuclear ribonucleoprotein family protein [Theobroma cacao]
16 Hb_000265_240 0.1168095781 - - PREDICTED: uncharacterized protein LOC105643590 isoform X1 [Jatropha curcas]
17 Hb_000220_040 0.1172896421 - - conserved hypothetical protein [Ricinus communis]
18 Hb_013405_060 0.1174849914 - - PREDICTED: probable RNA-binding protein 18 isoform X1 [Jatropha curcas]
19 Hb_005332_070 0.1178771911 - - PREDICTED: uncharacterized protein LOC105632487 [Jatropha curcas]
20 Hb_010368_020 0.1186217623 - - PREDICTED: uncharacterized protein LOC105630301 [Jatropha curcas]

Gene co-expression network

sample Hb_002066_070 Hb_002066_070 Hb_001564_130 Hb_001564_130 Hb_002066_070--Hb_001564_130 Hb_004787_060 Hb_004787_060 Hb_002066_070--Hb_004787_060 Hb_005322_040 Hb_005322_040 Hb_002066_070--Hb_005322_040 Hb_001329_290 Hb_001329_290 Hb_002066_070--Hb_001329_290 Hb_000444_080 Hb_000444_080 Hb_002066_070--Hb_000444_080 Hb_004449_170 Hb_004449_170 Hb_002066_070--Hb_004449_170 Hb_003292_040 Hb_003292_040 Hb_001564_130--Hb_003292_040 Hb_000670_020 Hb_000670_020 Hb_001564_130--Hb_000670_020 Hb_001512_060 Hb_001512_060 Hb_001564_130--Hb_001512_060 Hb_011970_030 Hb_011970_030 Hb_001564_130--Hb_011970_030 Hb_010368_020 Hb_010368_020 Hb_001564_130--Hb_010368_020 Hb_001348_070 Hb_001348_070 Hb_001564_130--Hb_001348_070 Hb_004787_060--Hb_005322_040 Hb_004787_060--Hb_001329_290 Hb_000286_070 Hb_000286_070 Hb_004787_060--Hb_000286_070 Hb_021419_020 Hb_021419_020 Hb_004787_060--Hb_021419_020 Hb_004787_060--Hb_004449_170 Hb_010921_010 Hb_010921_010 Hb_004787_060--Hb_010921_010 Hb_000012_220 Hb_000012_220 Hb_005322_040--Hb_000012_220 Hb_005322_040--Hb_010921_010 Hb_013405_090 Hb_013405_090 Hb_005322_040--Hb_013405_090 Hb_011609_100 Hb_011609_100 Hb_005322_040--Hb_011609_100 Hb_005322_040--Hb_001512_060 Hb_001329_290--Hb_004449_170 Hb_001329_290--Hb_000286_070 Hb_001329_290--Hb_001564_130 Hb_001329_290--Hb_003292_040 Hb_000265_240 Hb_000265_240 Hb_001329_290--Hb_000265_240 Hb_002234_140 Hb_002234_140 Hb_000444_080--Hb_002234_140 Hb_000444_080--Hb_010921_010 Hb_000009_530 Hb_000009_530 Hb_000444_080--Hb_000009_530 Hb_001552_020 Hb_001552_020 Hb_000444_080--Hb_001552_020 Hb_000116_310 Hb_000116_310 Hb_000444_080--Hb_000116_310 Hb_000444_080--Hb_001512_060 Hb_002477_300 Hb_002477_300 Hb_004449_170--Hb_002477_300 Hb_005588_030 Hb_005588_030 Hb_004449_170--Hb_005588_030 Hb_004449_170--Hb_001512_060 Hb_004449_170--Hb_000286_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.25682 3.16288 4.75654 1.24307 6.7014 4.73898
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.4528 9.15494 3.1493 1.91962 1.71548

CAGE analysis