Hb_001741_070

Information

Type rubber biosynthesis
Description Gene Name: SRPP7
Location Contig1741: 66902-68632
Sequence    

Annotation

kegg
ID pmum:103322055
description mannosyl-oligosaccharide glucosidase GCS1-like
nr
ID CDP03507.1
description unnamed protein product [Coffea canephora]
swissprot
ID -
description -
trembl
ID A0A068U5B5
description Coffea canephora DH200=94 genomic scaffold, scaffold_11 OS=Coffea canephora GN=GSCOC_T00015903001 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16590: 25601-75427
cDNA
(Sanger)
(ID:Location)		 006_B16.ab1: 60081-75089 , 039_H04.ab1: 60081-75192 , 040_L01.ab1: 60081-75133

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001741_070 0.0 rubber biosynthesis Gene Name: SRPP7 unnamed protein product [Coffea canephora]
2 Hb_124567_020 0.2412628399 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
3 Hb_001221_380 0.252753173 - - PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]
4 Hb_005772_010 0.2688662266 - - PREDICTED: abscisic acid receptor PYL4 [Jatropha curcas]
5 Hb_001863_420 0.2693786715 - - PREDICTED: probable protein phosphatase 2C 10, partial [Vitis vinifera]
6 Hb_151930_020 0.2700549483 - - Wound-induced protein WIN1 precursor, putative [Ricinus communis]
7 Hb_002784_140 0.2775580089 - - glutamate receptor 2 plant, putative [Ricinus communis]
8 Hb_002918_140 0.2778530974 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
9 Hb_000340_440 0.2807024514 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
10 Hb_178968_160 0.2850685716 - - -
11 Hb_001842_080 0.2875159733 - - -
12 Hb_027892_040 0.288908011 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
13 Hb_001616_020 0.2892317653 - - PREDICTED: wound-induced basic protein [Jatropha curcas]
14 Hb_000316_100 0.2901922684 - - protein with unknown function [Ricinus communis]
15 Hb_000696_220 0.290871557 - - PREDICTED: uncharacterized protein LOC105647113 [Jatropha curcas]
16 Hb_006132_050 0.2917092793 - - hypothetical protein EUTSA_v10028860mg [Eutrema salsugineum]
17 Hb_058143_010 0.2950746306 - - hypothetical protein JCGZ_01992 [Jatropha curcas]
18 Hb_000046_620 0.2957264509 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
19 Hb_101133_020 0.2995671192 - - PREDICTED: 15.7 kDa heat shock protein, peroxisomal [Jatropha curcas]
20 Hb_162033_010 0.3025853983 - - -

Gene co-expression network

sample Hb_001741_070 Hb_001741_070 Hb_124567_020 Hb_124567_020 Hb_001741_070--Hb_124567_020 Hb_001221_380 Hb_001221_380 Hb_001741_070--Hb_001221_380 Hb_005772_010 Hb_005772_010 Hb_001741_070--Hb_005772_010 Hb_001863_420 Hb_001863_420 Hb_001741_070--Hb_001863_420 Hb_151930_020 Hb_151930_020 Hb_001741_070--Hb_151930_020 Hb_002784_140 Hb_002784_140 Hb_001741_070--Hb_002784_140 Hb_178968_160 Hb_178968_160 Hb_124567_020--Hb_178968_160 Hb_000696_220 Hb_000696_220 Hb_124567_020--Hb_000696_220 Hb_124567_020--Hb_001863_420 Hb_003181_050 Hb_003181_050 Hb_124567_020--Hb_003181_050 Hb_089100_020 Hb_089100_020 Hb_124567_020--Hb_089100_020 Hb_002918_140 Hb_002918_140 Hb_124567_020--Hb_002918_140 Hb_000723_310 Hb_000723_310 Hb_001221_380--Hb_000723_310 Hb_001616_020 Hb_001616_020 Hb_001221_380--Hb_001616_020 Hb_000061_480 Hb_000061_480 Hb_001221_380--Hb_000061_480 Hb_001221_380--Hb_151930_020 Hb_007477_090 Hb_007477_090 Hb_001221_380--Hb_007477_090 Hb_002876_360 Hb_002876_360 Hb_001221_380--Hb_002876_360 Hb_004414_040 Hb_004414_040 Hb_005772_010--Hb_004414_040 Hb_000563_310 Hb_000563_310 Hb_005772_010--Hb_000563_310 Hb_005772_010--Hb_002784_140 Hb_001102_100 Hb_001102_100 Hb_005772_010--Hb_001102_100 Hb_002908_070 Hb_002908_070 Hb_005772_010--Hb_002908_070 Hb_000340_440 Hb_000340_440 Hb_005772_010--Hb_000340_440 Hb_001863_420--Hb_002918_140 Hb_001386_050 Hb_001386_050 Hb_001863_420--Hb_001386_050 Hb_001159_200 Hb_001159_200 Hb_001863_420--Hb_001159_200 Hb_002105_030 Hb_002105_030 Hb_001863_420--Hb_002105_030 Hb_001369_400 Hb_001369_400 Hb_001863_420--Hb_001369_400 Hb_003086_060 Hb_003086_060 Hb_001863_420--Hb_003086_060 Hb_151930_020--Hb_001616_020 Hb_151930_020--Hb_007477_090 Hb_007441_180 Hb_007441_180 Hb_151930_020--Hb_007441_180 Hb_001821_120 Hb_001821_120 Hb_151930_020--Hb_001821_120 Hb_000580_160 Hb_000580_160 Hb_151930_020--Hb_000580_160 Hb_011310_060 Hb_011310_060 Hb_151930_020--Hb_011310_060 Hb_002784_140--Hb_004414_040 Hb_002784_140--Hb_000340_440 Hb_002784_140--Hb_000563_310 Hb_006132_050 Hb_006132_050 Hb_002784_140--Hb_006132_050 Hb_001277_080 Hb_001277_080 Hb_002784_140--Hb_001277_080 Hb_000316_100 Hb_000316_100 Hb_002784_140--Hb_000316_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.705538 0 0.11919 0 1.14364 0.129221
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.01044 5.15881 0.869144 0 0.717453

CAGE analysis