Hb_001565_030

Information

Type -
Description -
Location Contig1565: 33930-34291
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001565_030 0.0 - - -
2 Hb_000167_060 0.1854983292 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Jatropha curcas]
3 Hb_000561_020 0.1890392215 - - hypothetical protein JCGZ_19196 [Jatropha curcas]
4 Hb_001214_140 0.1978830725 - - 60S ribosomal protein L27a, putative [Ricinus communis]
5 Hb_004976_070 0.1997997295 - - eukaryotic translation initiation factor 2b, epsilon subunit, putative [Ricinus communis]
6 Hb_001754_070 0.2044008819 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
7 Hb_003579_020 0.2049755837 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
8 Hb_000175_320 0.2056612276 - - PREDICTED: formin-like protein 14 [Jatropha curcas]
9 Hb_001366_140 0.2083895552 - - hypothetical protein POPTR_0014s10420g [Populus trichocarpa]
10 Hb_003226_220 0.2104868942 - - hypothetical protein CICLE_v10022836mg [Citrus clementina]
11 Hb_002226_040 0.2132660659 - - PREDICTED: uncharacterized protein LOC105641318 isoform X2 [Jatropha curcas]
12 Hb_000584_020 0.2164532494 - - hypothetical protein PHAVU_002G233500g, partial [Phaseolus vulgaris]
13 Hb_000045_250 0.2188401102 - - PREDICTED: uncharacterized protein LOC105646572 isoform X1 [Jatropha curcas]
14 Hb_001488_400 0.219046589 - - hypothetical protein POPTR_0018s12030g [Populus trichocarpa]
15 Hb_124055_010 0.2198971409 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
16 Hb_007245_080 0.2208195151 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
17 Hb_027684_020 0.2213291932 - - ribosomal protein S10 (mitochondrion) [Nicotiana tabacum]
18 Hb_000272_050 0.2218416085 - - hypothetical protein JCGZ_03991 [Jatropha curcas]
19 Hb_003943_130 0.2245910536 - - PREDICTED: uncharacterized protein LOC105636341 [Jatropha curcas]
20 Hb_043623_010 0.2257302879 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]

Gene co-expression network

sample Hb_001565_030 Hb_001565_030 Hb_000167_060 Hb_000167_060 Hb_001565_030--Hb_000167_060 Hb_000561_020 Hb_000561_020 Hb_001565_030--Hb_000561_020 Hb_001214_140 Hb_001214_140 Hb_001565_030--Hb_001214_140 Hb_004976_070 Hb_004976_070 Hb_001565_030--Hb_004976_070 Hb_001754_070 Hb_001754_070 Hb_001565_030--Hb_001754_070 Hb_003579_020 Hb_003579_020 Hb_001565_030--Hb_003579_020 Hb_003943_130 Hb_003943_130 Hb_000167_060--Hb_003943_130 Hb_005667_040 Hb_005667_040 Hb_000167_060--Hb_005667_040 Hb_020581_010 Hb_020581_010 Hb_000167_060--Hb_020581_010 Hb_004223_220 Hb_004223_220 Hb_000167_060--Hb_004223_220 Hb_019249_010 Hb_019249_010 Hb_000167_060--Hb_019249_010 Hb_002289_120 Hb_002289_120 Hb_000167_060--Hb_002289_120 Hb_000196_050 Hb_000196_050 Hb_000561_020--Hb_000196_050 Hb_000561_020--Hb_003943_130 Hb_000500_060 Hb_000500_060 Hb_000561_020--Hb_000500_060 Hb_031042_010 Hb_031042_010 Hb_000561_020--Hb_031042_010 Hb_009554_010 Hb_009554_010 Hb_000561_020--Hb_009554_010 Hb_003683_040 Hb_003683_040 Hb_000561_020--Hb_003683_040 Hb_002716_090 Hb_002716_090 Hb_001214_140--Hb_002716_090 Hb_000438_220 Hb_000438_220 Hb_001214_140--Hb_000438_220 Hb_001638_260 Hb_001638_260 Hb_001214_140--Hb_001638_260 Hb_002742_050 Hb_002742_050 Hb_001214_140--Hb_002742_050 Hb_004052_020 Hb_004052_020 Hb_001214_140--Hb_004052_020 Hb_003641_020 Hb_003641_020 Hb_001214_140--Hb_003641_020 Hb_002805_220 Hb_002805_220 Hb_004976_070--Hb_002805_220 Hb_000676_140 Hb_000676_140 Hb_004976_070--Hb_000676_140 Hb_002170_040 Hb_002170_040 Hb_004976_070--Hb_002170_040 Hb_000847_060 Hb_000847_060 Hb_004976_070--Hb_000847_060 Hb_004976_070--Hb_000167_060 Hb_000028_100 Hb_000028_100 Hb_004976_070--Hb_000028_100 Hb_140543_010 Hb_140543_010 Hb_001754_070--Hb_140543_010 Hb_130235_010 Hb_130235_010 Hb_001754_070--Hb_130235_010 Hb_001754_070--Hb_005667_040 Hb_001158_150 Hb_001158_150 Hb_001754_070--Hb_001158_150 Hb_004125_110 Hb_004125_110 Hb_001754_070--Hb_004125_110 Hb_000326_090 Hb_000326_090 Hb_001754_070--Hb_000326_090 Hb_000122_040 Hb_000122_040 Hb_003579_020--Hb_000122_040 Hb_000103_060 Hb_000103_060 Hb_003579_020--Hb_000103_060 Hb_003579_020--Hb_001214_140 Hb_097007_010 Hb_097007_010 Hb_003579_020--Hb_097007_010 Hb_043623_010 Hb_043623_010 Hb_003579_020--Hb_043623_010 Hb_004005_010 Hb_004005_010 Hb_003579_020--Hb_004005_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.64733 15.8419 1.70313 27.7864 11.0915 24.219
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.0453 83.6962 3.10323 9.85655 6.33107

CAGE analysis